Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04140 TTCACATCTATCCTATCCTTCATCTTAATTTCTCTTTCTCTACCAATTTTTTCCTCGGTTCTTCCGTTTGTAGCTGGGGTTTACCCTTTTGAGGGCTCAAGGAAACACAAGTAAAGGTGGAAAGAATGAGAAAGCCTAGTTGTGATGTCAAGGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGATTATATCAACAAACATGGCGAGGTTTGTTGGCGCACAATCCCTCAGGCTGCAGGTTTACTTCGGTGTGGAAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGCCCAGACCTTAAAAGAGGCAACTTTGATGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCTTTGCTAGGAAACCGGTGGTCACTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCACATCAGAAGAAAGCTCATAAGCAAAGGCATTGACCCAAATAATCATCGGCTAAACCACAAAATCACTTCCCTTATTCAGAATCCACCCATGTCTGATGATAATTCAAAATCCTTTGACCTGAAAGACATTACCAAGAATCATGGTGAAGTCTCAGATGTTGCAAGTGGTGAAGCTGAGTCATCAAGTGCTCTTCCGGATTTAAACCTTGATCTCTCTATTGCTGTTCCTTCATCTTCACTCACTAATTCTAAAAACAATCTAAACCCTTTTCATGAATCTAATTCGTCCAGGAAACTGCACCTTCATTCCCCCTCAACACTTCTTCTGTTTCAGTAATTAATAAATATCGTGGCTTGA 812 0.4052 MRKPSCDVKDLNKGAWSKQEDQKLIDYINKHGEVCWRTIPQAAGLLRCGKSCRLRWINYLRPDLKRGNFDEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLNHKITSLIQNPPMSDDNSKSFDLKDITKNHGEVSDVASGEAESSSALPDLNLDLSIAVPSSSLTNSKNNLNPFHESNSSRKLHLHSPSTLLLFQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04140 221 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pste3g04140 221 Gene3D - 67 137 - -
Pste3g04140 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Pste3g04140 221 CDD SANT 68 111 IPR001005 -
Pste3g04140 221 MobiDBLite consensus disorder prediction 191 221 - -
Pste3g04140 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 60 IPR017930 -
Pste3g04140 221 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pste3g04140 221 SMART sant 65 113 IPR001005 -
Pste3g04140 221 SMART sant 12 62 IPR001005 -
Pste3g04140 221 CDD SANT 15 60 IPR001005 -
Pste3g04140 221 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Pste3g04140 221 FunFam Transcription factor MYB7 68 162 - -
Pste3g04140 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pste3g04140 221 FunFam MYB-related transcription factor 12 65 - -
Pste3g04140 221 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pste3g04140 221 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pste3g04140 221 Gene3D - 5 66 - -
Pste3g04140 221 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04140 Pste-Chr3 36900436 36901912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04140 2 186 MYB Transcription Factor Family AT4G38620 54.460 5.70e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g04140 Myb_DNA-binding 9.2e-16 CL0123