Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04108 CACTAAACCTCCCTTAACTTCATTCCCATCCATTACATCTTTCTCACACAGAAAAACCCTATTTTCAAACTGATAAGCCAGAGAAACCTTAGCAGCCAATGTGCAAGTGCAATATTATGACAAAGACCTTGGAGTAGCTACATTCTAAACCTCAACATGTCTGATTCATTTGGTAGCACTTTTCACTCTTCCGCTCCAAACGCCACCCACAATTCCCATGCACCCCCCAAAATCAACACATTCTGCTCAATAGCCCAACCTTATTGTATTTGCACCCACTGTAACCACATCCTCGCCTTCAACCACCATGTTGGTAATGTAGCAGAGGAAGGGACAAATAACTCAGGGTCCCATCTGCAGTCTCAGCAAAGCACAAGGTGGAGTCCAACACCAGTTCAATTACTAGTCCTTGAGGAGTTGTATAGACAAGGAACTAAAACACCATCAGCTGAACAAATTCAACAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTATTGGTTCCAGAATCACAAAGCCAGAGAGAGACAGAAGAGGCGTCGAAGGGAGATGGAGGAAAACAATGCTGCATCTTCTAGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATAGCAGAAAAAGGATCTAATGGGTGGACTCAGTTTGAAGAGAGAGGCATACAAGTTTTGAGGAAAAACATAGCAGAAAGACAAGCTAAGTGGCAAGATATGGAAATGCCTTGTTTCCCTCCCATTACCATGCCAGTTCCTACAACTTCATCAGTATCAGCACACATAACAACACATAATAATAACACACAACTTTTAACCCCTCAATTTTACAATTTACCATCTGTACTCAACAGAGAAAGTTTAAACTATTATGGTGAGGAAAATGCAGATCCTGTGACCCTCGACCTATTTCCACACAAGAGGGATGACCAAGATGGCCTTTGTTTTGCTGAGAGAAAATCCATGTTCTGTGCCAATGCATCTATGGACACTGAAATAACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGAAGGGATACATAGCTTCTATGTTATGGAATATCTATGTCATGTAATGTGATTTTAGAATACATATATATGCACCTCTTAAACCAAAATAATTGGCTGTAACGAAT 1226 0.4135 MSDSFGSTFHSSAPNATHNSHAPPKINTFCSIAQPYCICTHCNHILAFNHHVGNVAEEGTNNSGSHLQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSGHAEESAALDIAEKGSNGWTQFEERGIQVLRKNIAERQAKWQDMEMPCFPPITMPVPTTSSVSAHITTHNNNTQLLTPQFYNLPSVLNRESLNYYGEENADPVTLDLFPHKRDDQDGLCFAERKSMFCANASMDTEITSNQFFEFLPLRN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04108 321 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Pste3g04108 321 Coils Coil 129 149 - -
Pste3g04108 321 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 315 IPR044555 GO:0003700|GO:0099402
Pste3g04108 321 MobiDBLite consensus disorder prediction 1 20 - -
Pste3g04108 321 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Pste3g04108 321 CDD homeodomain 73 128 IPR001356 GO:0003677
Pste3g04108 321 Gene3D - 56 147 - -
Pste3g04108 321 SMART HOX_1 70 137 IPR001356 GO:0003677
Pste3g04108 321 SUPERFAMILY Homeodomain-like 64 136 IPR009057 -
Pste3g04108 321 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04108 Pste-Chr3 36279678 36281934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04108 61 321 Wox Gene Family AT3G18010 34.653 3.56e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pste3g04108 Homeodomain 3.9e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g04108 3 36279678 36281934 Pste3g04108 3 36279678 36281934 ECH