Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04050 CCACCACACCACACCACACACACGCCCTCTCTGTCTTTTCTCTCTCTTCTTTTTTTTTTTCCACTTTTCTTGACTTTCTTTTTGGCTATAAATCTCCCTTCTTCTTCAGCTATGGTTCTTGTGTCCTATTAGACGTTGAATATAGTTAGAAGAAGAAGAAGGAGATTAATTAGTTGACACAATAGTTAATTTGTTAATTAATTAGAAGATATATAGATCCATGAAAGATGGGGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTTAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTTTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGAAACAAGAATATGGTGGTAAATACAGCTCTAATTTTCCTGAGATTTATGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGGTGTGTAGGGGCAATTTCATCACTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCCCAAGCTGAAGCAGTGCATCTCAGAGTGCGCCAAACTGCATCACTCTACAGCCCCACTAGCCCAACCAACAGTGGCTCTCCATCACAGGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGACCACCTATGGTGACTCTATCTGGTGA 727 0.4402 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQKQEYGGKYSSNFPEIYGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASLYSPTSPTNSGSPSQAKPIFDMDMVVDQTTYGDSIW 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04050 168 Coils Coil 101 121 - -
Pste3g04050 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 142 - -
Pste3g04050 168 Pfam Lateral organ boundaries (LOB) domain 13 119 IPR004883 -
Pste3g04050 168 ProSiteProfiles LOB domain profile. 12 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04050 Pste-Chr3 35054426 35060215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04050 1 168 AS2 family AT1G31320 63.687 1.89e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste3g04050 LOB 3.5e-37 No_clan