Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04043 ATCGATCAACATTACAAGAGCGCAACCGTGAATCGACCTGACCCACTGAGGCTATCTGACGCGAAGAGCTCACTCAGCCGCTATCCGTTGAAACGCGCGCGTTTTTTCACTCTTACTGTCCAATTTCTTCATCCCTTTCCGAAATTCACAGTAGAATCTGTTTTCCCTTCGGCTTGGTTTCAAATTCCGAAAATGTTGGGTGGTTTATACGGCGACCTTCCGCCACCGTCGTCGGCGGAGGAGGACAACCAACCGGCCCCCAATGTGTGGTCATCGAGCACGAAAATGGCCCCCGCCACGCTCCGCAAGCCCGCCTCGCTCGTCGCGCCGCCGCAAACCCTTCTCCGAGCCCAGCCCAAGCCCAAGCCCGCCGCCACTCCAGCTCCCGCCCCCAAGCCCGTGATTTCCTCTGCCCTCCAGCCCGACGAGGTCCTCCAGCCCGCGCTCGTCGGCGTCCAGTCCACCGTCCTGGAGGAGTACGACCCGGCCCGGCCCAACGACTACGAGGAGTACCGCCGCGAGCGCAAACGCAAGGCCCGCGAGGCCGAGATGTTGCGCGAGCTCGAGCGGCGCCGCCAGGAAGAGGAGGAGGAGGAGAGGGAGAGGGAGAGGGAAAGAGAGAGAGAGAGGGATTACGGCGAGTCCAGATTGAACGTCTCCGGCGAGGAGGCGTGGCGGCGGCGCGCTGCCATGAGTGGGGCGCCGCCGCCGAGGTCGCCGTCGCCTCCGCCCGGGAATTCGGACGGGTTTACCATTGGGAAGTCGGAGACCGGTGGACTGGGCGTTGGGGCCGGCGGGCAGATGACTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGAGGGGCAGGGGCTTGGGAAGCAGGAGCAGGGGATCACCACTCCTTTGATGGCCAAGAAGACAGATAGAAGAGCTGGGGTTATTGTGAATGCTAGTGACAATAGCAGCAAGAAAGTGAAAAGTGTTAACTTCCATGGGGTGCCTACCAAGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGACGAACTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACCCGAGTTTTGATATTTGAGATAACAGAACCAAATTTCCCAGCTGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCACTTATTGATCTTGATGGTCGATACTTTGGGGGTAGAGTGGTGCGTGCCTCGTTTTATGATGAGGAGAAGTTTAGCAAGAATGAATTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCTCCTGAAATATCAAAGCATCTATTTTTGCAAGGTATCCTTAGTTAAGGCACTGAAGACATCAGATTGAAGTTTAATACTTCATTACATGATAGTTTAGCATTGTATTGAGCTTAATCTTGGTCCATGTGTTTTGTAATAGTGACAAAGGGTTGTTGCTGGGGTAATTAATATGACCACAAGCATTGAACTTTCCTCACTGTGGCTAATCTTGTCACTGTACATTCAAAGTTCATTAATATTATGATTAGTTGGAGATTAAGGTAGCATTGAATGAGCATTCACCACTTTAGCGTACAATGTTCTAAACTTGATTTTATATGATCTTTTATTTTGGTTGAGTT 1647 0.5246 IDQHYKSATVNRPDPLRLSDAKSSLSRYPLKRARFFTLTVQFLHPFPKFTVESVFPSAWFQIPKMLGGLYGDLPPPSSAEEDNQPAPNVWSSSTKMAPATLRKPASLVAPPQTLLRAQPKPKPAATPAPAPKPVISSALQPDEVLQPALVGVQSTVLEEYDPARPNDYEEYRRERKRKAREAEMLRELERRRQEEEEEERERERERERERDYGESRLNVSGEEAWRRRAAMSGAPPPRSPSPPPGNSDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSSKKVKSVNFHGVPTKVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04043 436 SMART G-patch_5 265 311 IPR000467 GO:0003676
Pste3g04043 436 MobiDBLite consensus disorder prediction 73 92 - -
Pste3g04043 436 Coils Coil 168 211 - -
Pste3g04043 436 PIRSF SPF45 67 432 IPR040052 GO:0045292
Pste3g04043 436 SMART rrm2_1 332 413 IPR003954 GO:0003676
Pste3g04043 436 FunFam Putative splicing factor 45 330 416 - -
Pste3g04043 436 PANTHER SPLICING FACTOR 45 SPF45 65 427 IPR040052 GO:0045292
Pste3g04043 436 Gene3D - 327 425 IPR012677 -
Pste3g04043 436 MobiDBLite consensus disorder prediction 186 223 - -
Pste3g04043 436 SUPERFAMILY RNA-binding domain, RBD 334 420 IPR035979 GO:0003676
Pste3g04043 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 417 IPR000504 GO:0003723
Pste3g04043 436 CDD RRM_UHM_SPF45 329 425 IPR034653 -
Pste3g04043 436 ProSiteProfiles G-patch domain profile. 267 313 IPR000467 GO:0003676
Pste3g04043 436 MobiDBLite consensus disorder prediction 186 268 - -
Pste3g04043 436 Pfam G-patch domain 270 309 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04043 Pste-Chr3 34934741 34940878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04043 273 308 C2H2 Transcription Factor Family AT5G26610 61.111 6.75e-07 48.9