LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03979	AACACACAAATCAGGTTCTATTCTGCTTCTTCTCTTCTTCTAATCCCACACCGATTGCATCACCGTTTCCACCACTATCACCATCACCATCATCACTTATAAATATATTCATTCATTCCCAAAAAGTTCATATTTTGAGGCACCCCATTTAACTATTAACCCCTCTCTCCCTCTCTTCTCTCTTTGTTCTTTCAATTTTAGACAGAAGAAAGAAGAGAACGGCAATGGAAGGAGGAGGAGCTGCTCCGCCGGCCGACACCATCATGTCGGACGCAGCGCCGCCGCAGCCGGACCCTCATCAGCCACAGCAGCCCGCCGTGGCCATGGGGATCGAGAATATTCCGGCGACGCTAAGCCATGGTGGCAGGTTCATCCAATACAACATATTCGGTAACATATTCGAAGTCACAGCCAAATACAAGCCACCCATCATGCCCATCGGAAAAGGCGCATACGGCATCGTTTGCTCGGCTTTGAACTCGGAGACGAATGAGCACGTTGCCATCAAGAAGATTGCGAATGCTTTTGACAACAAGATTGACGCCAAGAGGACCCTCCGTGAAATCAAGCTGCTTCGCCACATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGATATTCAATGATGTTTACATTGCATATGAGTTGATGGACACTGACCTTCACCAAATCATTCGTTCAAATCAAGCATTATCAGAGGAGCACTGCCAGTATTTTCTGTATCAAATCCTCCGTGGGTTGAAGTACATCCATTCTGCCAATGTTCTGCATAGGGACTTAAAACCTAGCAACCTTCTCCTGAATGCCAACTGCGACTTAAAAATTTGTGATTTTGGACTGGCTCGTGTTACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTGAATTCTTCTGATTACACTGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTAATGGATCGAAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGTTGCGTTTACTTATGGAGCTGATTGGCACCCCATCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATATATTAGGCAACTGCCTCTTTACCGTCGCCAATCTTTCCAAGAAAAGTTTCCGCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTAACTTTTGATCCTAGAAAAAGGATTACTGTTGAAGATGCACTGGCTCACCCGTACTTAACATCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAACTTTGACTTTGAACAACATGCTTTGACTGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTCTAGCATTTAACCCCGAGTATCAGCAGTAGTGATAGTCATGTTGTCATTGGATTTGGATCGTGTGATGTCTGTGTCCATAGATCAAGAGATTTCCTTTGTGTATATATATCTATCATCTGAAACCGGATGATCTTGGGGTTGAATTATTTCCATCGGAGGCATGATTGGTAGACTGGAACAATCATAAGGTATTTGTATTGGCTTATTTGCTTCGTATTATTGTCCAATTCATTGGCTTCAGCCAACTGATAAATCTTTCCTTCGTCTTAAATTTGTGCTTTTATGAGTTTGAAATTCTCTTAAACAGAATCATGTTAAAAGTTATTTGTTCGGC	1726	0.4282	MEGGGAAPPADTIMSDAAPPQPDPHQPQQPAVAMGIENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREIFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFNFDFEQHALTEEQMKELIYREALAFNPEYQQ	398

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03979	398	ProSitePatterns	Protein kinases ATP-binding region signature.	72	96	IPR017441	GO:0005524
	Pste3g03979	398	Pfam	Protein kinase domain	71	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03979	398	SMART	serkin_6	66	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03979	398	SUPERFAMILY	Protein kinase-like (PK-like)	71	359	IPR011009	-
	Pste3g03979	398	Gene3D	Phosphorylase Kinase; domain 1	49	388	-	-
	Pste3g03979	398	ProSitePatterns	MAP kinase signature.	101	204	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Pste3g03979	398	ProSiteProfiles	Protein kinase domain profile.	66	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03979	398	FunFam	Mitogen-activated protein kinase	150	378	-	-
	Pste3g03979	398	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	64	352	-	-
	Pste3g03979	398	CDD	STKc_TEY_MAPK	59	394	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03979	Pste-Chr3	33569374	33574558	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03979	1	398	MAP Kinase Gene Family	AT2G43790	87.719	0.0	698

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Pste3g03979		Pkinase	1.7e-74	CL0016

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