Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03972 ATTTCTCCTTCAAATAATAGATATGCTATTAACCATCTTTAGATCATAGCTTAATTGTGAACTGTGATATCTTTCTGTGAATGGTATATCATAACCTTGTCCCTTTTCAGTTCTTTCACTGAAATCCAAGTCAGAGTCAAGTCTCACTTCCCTAAACTCCTCACCCTTTTGGCCTTTTCCCATTTAGAAATGATTCATTTCAAAACAATCAAGAAGAAAATGTGGGTGTTTTTTCACTGACCTTCTCTTTAAAACCTGCCAAGTTTTTTTTTTCCTTGCCTAATGGAAGTTATGTCCAACACCATCACCAAACAAAGCAAAGTAGCGGCTTCACAAGGCACCATCCATTTCCCAAAGCTTTCTCTTTTGTTCGCTCGTCCTACTCATCCACCTGGAGATTCCAATGGTGTTTCACATGGTGGCTTGTCCTCACCACATTCTTTGGTTTTTGAGAGTGACAAGGGAGAGTTGGTGAAGTGTCCTTCAACTTCAAGGGTAGGAAAGAATGAGATTTGTGAGGCTAAAGCTCTAGCAGCTTTGAAGAATCATAGTCAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACATTACGTGGCCTTGTGTCATCCACTGACAAGATGGATAAAGCCAGTTTACTGGCCGAAGTGATTAGCCAAGTGAAGGAACAGAAGAAAAATGCAGTGGAAGCAAGCAAGGGTTTTCTGATTCCAATGGATGCAGATGAAGTGAAAGTTGAACCATGTGATGATGAAGGAGGAGATGGATCCATGTCTTTCAGTGCAACTATATGCTGTGATTTCCGACCTGAGATACTAGCAGACCTAAGAAACACCCTTGATTCCCTTCCACTTCATCTAGTGAAGGCAGAAATGTCAACATTGGATGATAGAATGAAGAATGTGTTTGTCTTTACTTGTTACAAAGAGAAAAATATTGATATTGAGGCATGCCAAGCTCTTGCAAGGACTGTTCACCAGGCACTAAGTTCTATGCTGGATAAGGCTTCAGCCTCAATGGAGTTCTCACCAAGAACATCACATGCAAGTAAGAGAAGAAGACTAGGCTTTTTTGGAACATCCACTTCCTCATGCAACCATGAATCTTGTTTGTGCTGATGCCAACAATTTGCTGCGTTATGTTATTTATTTCTACATTGTCAAGAGTGTGGTATTAGTATTTCTTATTCTTTGAGAAATGCTGCTACCAAAACATTGGTTAGTATATTGTTTGACATATTTTCTATTATTGGGTGAATCTCACCAAGTAATAAATGAGATTCATTAAATAGAATATGTGACATTATATAATGAGAGATGCATTTATCCAATAACAGA 1347 0.3898 MEVMSNTITKQSKVAASQGTIHFPKLSLLFARPTHPPGDSNGVSHGGLSSPHSLVFESDKGELVKCPSTSRVGKNEICEAKALAALKNHSQAERRRRERINGHLATLRGLVSSTDKMDKASLLAEVISQVKEQKKNAVEASKGFLIPMDADEVKVEPCDDEGGDGSMSFSATICCDFRPEILADLRNTLDSLPLHLVKAEMSTLDDRMKNVFVFTCYKEKNIDIEACQALARTVHQALSSMLDKASASMEFSPRTSHASKRRRLGFFGTSTSSCNHESCLC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03972 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 134 IPR036638 GO:0046983
Pste3g03972 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Pste3g03972 281 CDD ACT_UUR-ACR-like 172 238 - -
Pste3g03972 281 Gene3D - 81 142 IPR036638 GO:0046983
Pste3g03972 281 PANTHER TRANSCRIPTION FACTOR BHLH30 46 265 IPR045847 GO:0003700|GO:0006355
Pste3g03972 281 SMART finulus 90 139 IPR011598 GO:0046983
Pste3g03972 281 CDD bHLH_AtAIG1_like 79 157 - -
Pste3g03972 281 MobiDBLite consensus disorder prediction 32 52 - -
Pste3g03972 281 Pfam Helix-loop-helix DNA-binding domain 88 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03972 Pste-Chr3 33399620 33404091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03972 76 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.132 3.84e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g03972 HLH 3.7e-07 No_clan