Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03970 AGCGCAAGACCGAAGAGAACGGCGACGCCGATTCTTCTCCGCCACCGTACTCCGACGCAGTCCCTCCCCACCGCCGTCGCCACCCCCACACCCCTCGCCGCCGAAGACATCCGCAAGATCCTGCAACCGTTCTCCCAGGAGCAACTCCTTGAGCTCCTCCAATCGGCGTCCCTGCGCCACCCTGACGTTCTCGATTCCGTGCGCGCCGTTGCGGACCGTGACTCTACCCTCCGGAAGCTCTTCGTGCGCGGCCTCGCCGGCGATACCACCACCGAGACGCTCCGCAGCGTGTTCTCGACGTTCGGCGACCTCGACGAGGCCATTGTGATCATGGACAAGACCACGGGACGGTCCAAGGGCTACGGCTTCGTCGTTTTCCGCCACGTCGATGGCGCAATCCTCGCCCTCAAGGAACCCAGCAAGAAGATCGACGGCCGCATGACTGTCACGCAGCTCGCCGCCGCCGGAGGCCCCGGCGGTGGCGACGTATCCCTCCGGAAGGTCTTCGTCGGGAACGTTCCCTTCGAGATTTCCTCAGAAACCCTCCTCACGGAGTTCCTCAAGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCCAGCGGCAAATCGAGGGGTTTCGCTTTCTTTGTTTACAAAACCGAAGAGGGTGCAAGGGCTTCGTTGGCGGAGCCTGTGAAAACCATCGAGGGGCACCAAGTGATTTGCAAATTGGCCGTGGATAACAAAAAGGCGAAACCTTTTGGAGCGGATCAGCACCAGCAGCATCACCAGCAGCAGCAGCAACAACAACATCCGCAGCAGCAGATGCAACCGTATAACAACCCGGTGCCACAGTATGGTGGATATGGTGGAAACGGTTATGGAATGCAGCAGCATCCGGTGCCACCGTATAACAACCCGGTCCCCGGTGCTGCTGGTGGGTATGGCCACGGAATTGGTGGTGGGTATGGTAATTCGCAGATGGGTGGCCCGGTTTCCGGTGATTATGGTGCTAGGGTGCCTGCCAATTCTGGTGGGGGATACCCTGATGGCTCGCAGTATGGCTACCCTCCTTCGACTGGGCTTCAGCCTCAGCCGCAGCCGCCAGTTCCAATGCAGAGACCTCCCCCTGGTGGAATGTACCAAGGCGTCATTCAGACAATGAAAACTTTGGTTTTGGTTACATGGACTGCTGTAATTTGTTGCTGCTTCACTACCTCTACATCTATGTGTTATGCTTCCATTTGTGAT 1239 0.5827 SARPKRTATPILLRHRTPTQSLPTAVATPTPLAAEDIRKILQPFSQEQLLELLQSASLRHPDVLDSVRAVADRDSTLRKLFVRGLAGDTTTETLRSVFSTFGDLDEAIVIMDKTTGRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSETLLTEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLAEPVKTIEGHQVICKLAVDNKKAKPFGADQHQQHHQQQQQQQHPQQQMQPYNNPVPQYGGYGGNGYGMQQHPVPPYNNPVPGAAGGYGHGIGGGYGNSQMGGPVSGDYGARVPANSGGGYPDGSQYGYPPSTGLQPQPQPPVPMQRPPPGGMYQGVIQTMKTLVLVTWTAVICCCFTTSTSMCYASICD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03970 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 254 IPR000504 GO:0003723
Pste3g03970 413 Gene3D - 41 162 IPR012677 -
Pste3g03970 413 MobiDBLite consensus disorder prediction 330 370 - -
Pste3g03970 413 Gene3D - 163 276 IPR012677 -
Pste3g03970 413 PANTHER GEO13361P1-RELATED 164 343 - -
Pste3g03970 413 MobiDBLite consensus disorder prediction 254 278 - -
Pste3g03970 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 146 IPR000504 GO:0003723
Pste3g03970 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 234 IPR000504 GO:0003723
Pste3g03970 413 FunFam UBP1-associated protein 2C isoform A 61 161 - -
Pste3g03970 413 SUPERFAMILY RNA-binding domain, RBD 69 156 IPR035979 GO:0003676
Pste3g03970 413 SUPERFAMILY RNA-binding domain, RBD 163 253 IPR035979 GO:0003676
Pste3g03970 413 SMART rrm1_1 167 239 IPR000504 GO:0003723
Pste3g03970 413 SMART rrm1_1 79 151 IPR000504 GO:0003723
Pste3g03970 413 MobiDBLite consensus disorder prediction 249 291 - -
Pste3g03970 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03970 Pste-Chr3 33388262 33390083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03970 162 345 C2H2 Transcription Factor Family AT2G19380 26.442 5.86e-13 68.6