Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03946 TGCTACCAAGCTGAGGTTGCAAATGGAGACAACAAAGTTATATCTATAGGTGCAGTAGTTGATGTTAACACTCGCATTGGGAAAGAACAGCTTGTGGCCATGAACCTTGCAGCTCACAGTTACAATAACACTTCCAAAGACTACAAGCTGTCTATTCATTTTCCAGAATCCACCAGAGATCCCTTTAGACCCACTTCTCTTGCTAGAAAGATGATAAAGAAGCAGAAGGTGCAAGTGATTGTAGGGATGCACACATGGACAGAAGCTGCTTCAGTGGCTGGATTAGGACGCAGAGCTCAAGTTCCTGTCATATCCTTTGCAGCACCAACCATTACCCCACCAATGATGCCAACTCGCTGGCCAAATTTGGTAAGAATGACAAAAGATGGTACTGCATATGCAAAATGTGTTGCTGATATGGTACATGCTTATAGTTGGCAGCGTGTGGTAGTCATTTATGAAGATGGAGATTATGAGATGCTATCACTGCTATCTGAGACCCTCCAAGATGTTGGTTCAATGATTGAGTACCGTTTGGCTCTTCCATCACCTTCCTATCTACCTAATCCTGGAGAATTCATTCGGGAGGAGCTGTTTAAGTTGATTGAAAATACACAATCCCGGGTGTTCATTGTTCATCAATCGTCACTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTAGTGGATGGAGAATCAGCTTGGATAATCCCAGAGAGTATAACTAATTTGCTTGACTCAGTCAACAAGTCTGCCATTTCCTATATGAAAGGAGCTTTAGGAATGAAGACCGACTACTCTGAAGATAGCAATGAGTATCAAGATTTTGAGGCTCAGTTCCGAAGATCTTTTCTGGCCAAGTATCCTGAGGAGGATAACCGCAACCCGGGATTCTATGCTCTTCAAGCATATGATAGCATTAAAATTGTTGCACAAGCAATAGACAGAATAGCCAGCGACAATGCTAATAGCAGAAACACTTTGCTAAAAGAAATACTGTCTAGCAATTTCCTTGGTTTAAGTGGAGAAATTCGATTTGAAGCAGCACAGCTCTTGCAGAATCATACCTTTAGGATTGTAAATGTAGATAGGAAGACTTACAGAGAATTAGACTTTTGGTGGACTCTAGAACGTGGGTTCATCACAAACCTCACAACAGAACAAGGTTCCACTAGTATTTCTAGGAACACAGAAAATTTAAGTGGAGTAATATGGCCAGGGAAAGTAAATGGAGTTCCGAAAGGATGGAATGTGCCTACAAAACAAAAAAAAATGAAAATAGCGGTTCCTGGAAGAACAACCTTTTCAAAGTTTGTCAAGGTTGATCATGATGAGCTTACAAATTCATTCAAGTACAGTGGATTCTGCGTTGAAATTTTTTACAAGGTATTAGACATTTTGGGGTATGATCTGCCATACGAATTTTATCCCATCAATGCAACTTATCCCGATCTGGTTCAACTTGTCTATAACAAGACTTACGAGGCTGTTATTGGAGACGTGACCATAATAGAGGAAAGACTGCAATACGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATTGTTACGGAAAAGTCCAAAGAATCGACATGGATGTTTATGAAGCCGTTCACCTGGCAAATGTGGGTGGCAACTGGTGCCTTGTTGATTTACACAATGGTAGTTGTGTGGTACCTTGAGAGAGAACCCAATCCTGAGTTTCATGGCAGTTGGAAAAGCCAAATCAGCACTGCTCTTATGTTTACCTTTTCCTCTCTATTCTTTGCTCATAGGGAGAAAATCTATGGTCACTTATCTCGTGTGGTTATGGTATCATGGCTCTTTGTTGTATTGATTCTTAACTCAAGCTACACGGCTAGTCTTTCTTCTATGCTCACAGTTAAACGACTTCAACCAAATGTGACAGACATTCAGTACCTGAAGAAGAATAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGAAAGTCGAACGATTCAAGGCAGAGAACATTATTAACATTGATAGTGAATACAGTTATGCAGGTGCATTCGAAAACAACTCAATAGCAGCCGCTTTTCTAGAACTCCCTTATGAAAAAGTATATATAAGTAAATACTGCAACGGATACTCTGCCTCTGTACCAACTACCAAATTTGGAGGGCTTGGATTTGTGTTCCAGAAAGGCTCTCCAATGGCCAGAGATTTTTCCAAAGCTATACTGCAGCTCATGGAGAAGGGAGAAATGAAGAATATGGAAGATAAATGGTTGAACTCTGCAGGAACGTGCTCCGACAAGTCAACCTCTGAGAGTACAGAAAGTTTGAAGCTTGAAAGCTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTACAACATAGGGTCTCTGAAATCTAGTCAAACATCCCAGGATGAGACACAAGAGCATAATAGCAACCAAGGTAATGAAAGCCCATGGAAAAGGGTAGTTGTAATAGCTAAGCATATTTACAGCAGAAAACATGCACCACCACTGACACCCCAACATCAGCATGCAATGGCTCCACAATTAACAGATATCAGAACTGTGTTTTCTCCACCAACAGTTACCATTCACTGCTCTAGATCCATCTAGCACATATATGCCTACGATAAATTTTTTCATCCATCTCTAGATCTACGGGGTACCTTTAGAAGGCAGCATGTAGTACGGGGTACCTTTAGAAGGCAGCATGTAGTACATAGGATTTAGGA 2774 0.407 CYQAEVANGDNKVISIGAVVDVNTRIGKEQLVAMNLAAHSYNNTSKDYKLSIHFPESTRDPFRPTSLARKMIKKQKVQVIVGMHTWTEAASVAGLGRRAQVPVISFAAPTITPPMMPTRWPNLVRMTKDGTAYAKCVADMVHAYSWQRVVVIYEDGDYEMLSLLSETLQDVGSMIEYRLALPSPSYLPNPGEFIREELFKLIENTQSRVFIVHQSSLEMVIHLFREASQMGLVDGESAWIIPESITNLLDSVNKSAISYMKGALGMKTDYSEDSNEYQDFEAQFRRSFLAKYPEEDNRNPGFYALQAYDSIKIVAQAIDRIASDNANSRNTLLKEILSSNFLGLSGEIRFEAAQLLQNHTFRIVNVDRKTYRELDFWWTLERGFITNLTTEQGSTSISRNTENLSGVIWPGKVNGVPKGWNVPTKQKKMKIAVPGRTTFSKFVKVDHDELTNSFKYSGFCVEIFYKVLDILGYDLPYEFYPINATYPDLVQLVYNKTYEAVIGDVTIIEERLQYVDFTVPYAESGLSMIVTEKSKESTWMFMKPFTWQMWVATGALLIYTMVVVWYLEREPNPEFHGSWKSQISTALMFTFSSLFFAHREKIYGHLSRVVMVSWLFVVLILNSSYTASLSSMLTVKRLQPNVTDIQYLKKNNMKIGCDGDSFVRTYLEKVERFKAENIINIDSEYSYAGAFENNSIAAAFLELPYEKVYISKYCNGYSASVPTTKFGGLGFVFQKGSPMARDFSKAILQLMEKGEMKNMEDKWLNSAGTCSDKSTSESTESLKLESFWVLYVISGATSTICFLLYNIGSLKSSQTSQDETQEHNSNQGNESPWKRVVVIAKHIYSRKHAPPLTPQHQHAMAPQLTDIRTVFSPPTVTIHCSRSI 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03946 884 Gene3D - 21 358 - -
Pste3g03946 884 Pfam Receptor family ligand binding region 32 368 IPR001828 -
Pste3g03946 884 Pfam Ligand-gated ion channel 766 795 IPR001320 GO:0015276|GO:0016020
Pste3g03946 884 CDD GluR_Plant 427 764 - -
Pste3g03946 884 Gene3D - 538 677 - -
Pste3g03946 884 PIRSF IGluLR_plant 1 863 IPR017103 -
Pste3g03946 884 SMART GluR_14 428 766 IPR001320 GO:0015276|GO:0016020
Pste3g03946 884 Pfam Bacterial extracellular solute-binding proteins, family 3 455 765 IPR001638 -
Pste3g03946 884 SUPERFAMILY Periplasmic binding protein-like II 406 765 - -
Pste3g03946 884 Gene3D - 129 379 - -
Pste3g03946 884 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 813 IPR015683 -
Pste3g03946 884 Gene3D - 713 772 - -
Pste3g03946 884 FunFam Glutamate receptor 428 540 - -
Pste3g03946 884 FunFam Glutamate receptor 133 298 - -
Pste3g03946 884 FunFam Glutamate receptor 538 668 - -
Pste3g03946 884 SUPERFAMILY Periplasmic binding protein-like I 11 420 IPR028082 -
Pste3g03946 884 CDD PBP1_GABAb_receptor_plant 15 384 IPR044440 -
Pste3g03946 884 Gene3D - 424 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03946 Pste-Chr3 33061381 33065265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03946 14 805 Ion Channels AT2G29120 34.307 6.23e-147 456