LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03919	GAAAGAGGTGATTTGATGGTTTTCCGAAAAAGCCAACCCCATAATTGAGTCTCTCCTCAAGAGCCCAAAAAGGGTGGGAAAAATGAAGAGAGAGTGATAGGTCAGTGGGAGAGAAAGACAGAGACACAGAAAGCGGGTCTCTTTCTTTTTGGAGTATTGGGTCGGGTTCTTTTGGCAATGCCAAAGTTGGTCACGCTCTCTGAAAATGCAGAAGGCATGAACGAAACCACTCACTCGCTCCACTCCTTCAAATATCTTCTTCTTCTTCTCTCCTCCTCTAACTCTCTCTTTTCCCCATGGCTTCTGCTTCTGCTTCTCCTCCCCTCATCGATCTCAACAACGCCACCGAAGATGACGAAACGCCGTCGTCTCAGCCCTCCTCCTCCTCCGTCTGCCTCGAACTCTGGCACGCCTGCGCTGGTCCTATGATTTCCTTGCCCAAGAAAGGCTCTCTTGTCGTTTACTTTCCTCAAGGACACTTCGAACACCAACAGCACCTTCACGATTTTCCGCTCCCCACAATCCCCTCCCATGTCTTCTGTCGCGTCCTCGATGTCAAACTCCATGTGGGTCTTCCCCTTTCTGTCCCCAAACACCGCAAAATTCGAAATGCTGTCGGTGCTGCCTTAAAGTTTGTGTTTTTTTGTTTTCTGCAGGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTCGTGTTGGTTCCCGAAACTGAGCAAGTGCAGCAGAAGTTGCAGGAAGGGGAAGTTGATGCTGATGGTGAAGAGGATGATTCTGAAGCTGTGATGAAGTCCACGACGCCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGTGCTGCAGAAGATTGTTTTCCTCCTCTGGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCGAAGGATCTGCACGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGCCAGCCACGCCGACACTTGCTTACCACTGGATGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAATCCGTAGGGCTGCTCAATTGAAAACTGGCAGTACCCTTTCCACTCTTCCTGGCCAGCAACTGAATCTTAGCAGTCTTATGGATGTGGTTAATGCTTTATCTTCAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGCTCATCTGAGTTCATCATACCTATTCAGAAATTCTTGAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTAATTGTTGGAATTACTGATGTCGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGATGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCGTGGGAGATCGAGCCATCCGGTTCTGCGTCTACTGCGAATAACATGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGAATATCCAGTTCCCAATGTGATTGGAACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTAATTTTGATAGTATTAATTCTCAGAGTCATCAGCTATCTGATTTGAGGAGGTGCTATCCTGGCTCAAACTGTCCTAGGATTCCCGCAACAGGAAATAGCATTGGAATCCCACGAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTTAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTTTCTGTTGATGAGGCTTGTGGAAATGGTCACTTTGGACCTTTTGATGGTTACCAGGCGCTGAGATCCCGCAATGGATGGTCTTCCCACATGAGTAACAATTCTTCACATTTGCATCCACCTGTTCCGTCGGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATACAGTTTCAAACTCAGATTATAACAAAATTAGTCAGTCAATGGAATGTAAACTATTTCAACGAGGCTCGTATGCTTCTGAAGTGAAAGGTGGAAAATATGTATCAACCCCCTATGATCCTCTTCTCTGTGGACTACCTCAGGAAGGAGCAAATTCGTTTGGTCTTTCAAACCTGCATAATCAGTTAGATAGTTCTGGTTCACTTGAGTCGATTTCAGTACTGAGAGCCAGTCAAGAGTTGGTTCCCTCGTGTAAAAGTAGATGCAGAGTCTTTGGCTTTTCATTAACTGAGGGTGCTCCTGTTTCAAATAAAGAGGCTGCTGACCCTTCTGCTGTCACATGTTCTGGGCCAACCTTTAAAAGGCATGTTGAAGATAATTTTCATCCAGGGCATTCTCTCAGGAGCTAGGCTGTAGGAAGTTAGTTATTGCACCAAAGGTGTGATGCAATATTGACTTGGAAATCATATGATGTATTCTAGTAGTGATGCTGGCATGAGGTAGCGGAAGAGAATGTCCACAGTTGTGGTTATGTGCTTTGCTCAAGTAATTTGGAATATTAGAGACCAAAATGTTGTATCTATTCGCCTAATCTAGATATTTATCTTGTTAAATTGGCTATGACCACATTCAAGTTCCTGTATTAATCTTTCATACTCTTTGTATGACTTGACTTGTATTGGGAAAACTCAAAACGATATATATTACCCACCATTTTGGCCAAATGCTGAACAAAGTTAGCTAGGTGGCAGTGCATAACCCATCAATTATCTTTGTGGCCGT	2862	0.449	MASASASPPLIDLNNATEDDETPSSQPSSSSVCLELWHACAGPMISLPKKGSLVVYFPQGHFEHQQHLHDFPLPTIPSHVFCRVLDVKLHVGLPLSVPKHRKIRNAVGAALKFVFFCFLQAEEGSDEVYCQVVLVPETEQVQQKLQEGEVDADGEEDDSEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKTGSTLSTLPGQQLNLSSLMDVVNALSSRCAFSIHYNPRVSSSEFIIPIQKFLKSLDYSYSVGMRFRMRFETEDAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNMISAGLKRTKIGLPSAKLEYPVPNVIGTSDFGESLRFQKVLQGQEILGVNTNFDSINSQSHQLSDLRRCYPGSNCPRIPATGNSIGIPRVSSNVSCNGIGFGESFRFQKVLQGQEILPSQPYGRALSVDEACGNGHFGPFDGYQALRSRNGWSSHMSNNSSHLHPPVPSGQVSSPSSVLMFQQAVNTVSNSDYNKISQSMECKLFQRGSYASEVKGGKYVSTPYDPLLCGLPQEGANSFGLSNLHNQLDSSGSLESISVLRASQELVPSCKSRCRVFGFSLTEGAPVSNKEAADPSAVTCSGPTFKRHVEDNFHPGHSLRS	730

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03919	730	SMART	B3_2	171	273	IPR003340	GO:0003677
	Pste3g03919	730	CDD	B3_DNA	169	271	IPR003340	GO:0003677
	Pste3g03919	730	Gene3D	-	334	408	-	-
	Pste3g03919	730	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	30	696	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Pste3g03919	730	SUPERFAMILY	DNA-binding pseudobarrel domain	163	278	IPR015300	-
	Pste3g03919	730	Gene3D	-	169	273	IPR015300	-
	Pste3g03919	730	MobiDBLite	consensus disorder prediction	1	28	-	-
	Pste3g03919	730	Pfam	B3 DNA binding domain	171	272	IPR003340	GO:0003677
	Pste3g03919	730	ProSiteProfiles	B3 DNA-binding domain profile.	171	273	IPR003340	GO:0003677
	Pste3g03919	730	FunFam	Auxin response factor	169	273	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03919	Pste-Chr3	32533343	32539485	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03919	170	528	B3 DNA Binding Superfamily	AT2G33860	59.722	1.30e-143	426

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Pste3g03919		B3	9.2e-23	CL0405

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03919	3	32533343	32539485	Pste3g03919	3	32533343	32539485	ECH

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