Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03908 TCCTGTTTGACAGGAACAACAAAACACACATTCACTCTGACACCGTTCGTTCATAAAAAAGAGAACCCAAAATAATAAAAAGAAAAACAACGGATTATTATTCGAAGAAGAAAAAATAAAATTAAAAAGGAAATTATTATGAAAGGTGGTGGTGGAATTATAGTAGGAGTAGCAGTCGAGAGCAACTGTTGTTGTTGGTTTATTATTTTTGTTTTTCGATTATTAATATTCTTATCTTACTATTGTTTTTTATCTTGGTTCTTTTATTCTTCGTTGTTCTATCTTTTCAATTCTCTCATTGCACACAGCTTTTATATTTTACCCTTTATTTATTGTTGTTTTTGTTTTCATCTCTCGTGCTTTTCCATTCCTTCGGTGTTACGGTAATTTGGAGTTTGATCCTCTGAGAGAAAGAAAGGCATAAAATTGAAGGGAGAAAAGAAATTGATTATTCTGGGGAACCCTAATTTCTGTTTCTTGATCTATAGTGGTTCTGCAATTTGGGGGTTTTGTTAAACGGGGACAGGGAAGTCTCGATCTTTGATCGATTTTTGTCGATGGAGGGTGAGGGTTGTTCAGAAGGAGAGAATAATCGGAGACGGGGTGCCACAGATGATGATAGTAATGAGAATAACAACAACAATAATAATAACGTAAGCAGTAGCAAGATTATGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAAATGAAAACCCCCTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGACAATTACCCTTCGGAGACGATGAGGCAAGAGCTGTCTGAGAAATTGGGTTTGTCAGATCGCCAGCTTCAGATGTGGTTTTGCCACAGGAGGTTGAAGGACAAGAAGGACTTACCATCTAAGAAGCCACAGCCACAGCGGAAGGTGCCAGCAGAACCATTGCCAGAGTCACCAAGGGATGGCCACAGGTTGGCTCCTGAACTTGGTAATGAGTATGGATCCGGCTCCGGTTCAGGTTCCAGCCCGTATGCCCGAGTGGAGCCCCCAAATGTGGTTCTCCGGGGTGTGTCGGGTTATTATGAGTCTCCAAAGGCTATGAATATGATGGAGCTTAGAGCAATTGCTTGTGTCGAGGCACAGTTAGGGGAGCCATTGAGGGAGGATGGACCTATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAGCAGCAGTTACAGAACAGCACAAGATACCAAGTTTTGCCTATGACAGTAAAATATATGAAAGACATGATGGTAGAACTAATAAGGCTATGGCAAGGACACTCCGTGACCATCAATATCTACCAAGTAAGTCTGGCATTAGGTCTGATGCTTTTGGACAGTTCAGCCAATCTCATTTACATGATTCAATGGAAGGTCCTGTCAGAAATCCTTCTTTTTCACATGGAAGTGAACAGCTACCTAGAATTCATGCTACTCAAGGTCATTCTTCTCGTGTTCGTCATTTGTCTCATCACGACAAGCAATTGATTCCCTATCAATCTCCTTCTCGGGACAACGATGTTGCCCCCCAAAGGGAATTGTACCCAAACACAGCTAATGTTGAGACGAACTCTCACTTGACTGATCGCCAAATTGTTGGGCCGGAAAATCTCTATGCTCCACCTAGTGGACAAGTTTTGCACAACAATGCAATGCGGATTGAGAAGAAAAGAAAGATTGAAGAGCGAACAAGAAAAGAAATGGAGAAACAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATGCGCGAGAGACAAAGAGAGGAGGAAAGAGCAAAACGTGAGCAGAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAAAGCAGAGAAAATGAGACAAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAAAAGGAAAGCTGCTCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAATTGGAAATGATGGAATTGGCTGCCTCGAGCAAAGGATTTTCCTCTATTATCCATCTTGATTTTGATACTCTACAACACCTTGAGTCATTTAGAGATTCATTGAGTGTTTTCCCACCAAAGAGTATAAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAAAAGAATGTTGGCAATCTTCTTATGGTCTGGAGATTTTTAATTACTTTTACTGATGTTCTGGAGTTATGGCCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTGTTGGGTGAGATCCATGTTGCTCTTCTTAAGGTGATAATTAAAGACATTGAAGATGTTGCTAGGACACCTTCTACAGGATTAGGAGTAAATCAGAATGGTGCTGCTAACTCTGGAGGTGGTCATCCAGAGATTGTGGAAGGGGCGTACGCGTGGGGTTTTGACATACGAAACTGGTATAAGCACTTAAATCTATTGACTTGGCCAGAAATTTTTCGACAGCTAGCATTGTCGGCAGGATATGGACCACAGTTGAAGAAAAGAAATATTACATGGTCATGTACAAATGATAAAGATGAGGGCAGAAGTGGTGAAGATATCATTTCTACACTTCGTAATGGATCAGCAGCCGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAGTTTGCAGCATTTCATGTTCTCTCACTTGAGGGTAAGAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACGACCAGCAAGACACCTGAGGCATCGATTTCTGTTGCTTTAACAAGAGATGTCAAGCTTTTTGAAAGGATAGCTCCGTCAACATATTGTGTACGTGAGGCATTTAGAAAGAATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGGGAGGATGCTGATGATGTTGAAAGAGAAGAGTCAGACAGTGATGAAGTTGATGAGGATCCTGAAGTTGACGATTTGGTAAATCCATCAGGGGCTAATAAAACATCTGAACAGTGTGATGATTTTTCATCAAATAGAAAAGAAAATTTGGGTCATGATGTTGAAGTTCAAGGTGAGTTTGACAAGGATCTACCTTGTTTTCCTGAGCATAGTTCCAAGAAAGCTGATGCTCCATTTGCTGTCACTGGACAACCCAGTGCTTGTGAAGATCTTAATGCTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCTTGGAGAGTCATGGGTTCAAGGGCTCGCTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATTCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTTGGCAGATGCACAGCTAGATAAAGTTCGTCTAAAAGATGAGACTTTGAATAAATCTGATCCATCTATTAATGGGAATAAAGTTGAAATACAATACTCTTGTCCTGTCATGGAAGGCAAGCAAAGCCCATTGCTTGACATTAATATCGTCAACAATAATAATGTGCCTTCTCCCAGCATTGTGGAAAATCAGAAAGCAGCTTCTGGTGTACAGAGCCTGTCTATTGAAAAGCACTCTTCAGTTCTAGATCTTTGCACTGGTTCAGATAACCCTCAGATTCAATCATATGCGCAGCATTCAAAAAGGTCACGTTCTCAGATGAAATCTTATATTTCCCACATAGCAGAGGAGATGTATGCCTACAGATCCTTACCACTTGGGCTAGATCGCAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGACCCTGGCTCTGGCAGGATCTTTGTTGAATATCTAGATGGCAATTGGAGGCTTATTGACACTGAAGAGGCCTTTGATGCACTTCTGAATTCACTTGATTCACGCGGGATAAGGGAATCTCATTTGCGTCTAATGTTGCAAAAGTTTGAGAGTTCCTTCAAAGAAAATGTTCGGAAGAATACTCAAAGTTCCAAAATTGGAAGCAGGGGTGAAACGTGTGTTAAAAATGAAGTTGATGAAACAGATTCCAGTCCTGATCGCCATACTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCCTGAACTCTGACACTTCAGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGACAAGAAATCTGCCTTGCGAAGGTATCAAGATTTTCAAAAATGGGCATGGAAAGAATGCTATAACTCATCAATATTGTGTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCAGGTTGTCATCTGTGATATCTGTATCAACTCTTATTTCTTTGAAGATTCCCATTGCAATTGTTGCCACCGGACTTTTCCCTCAAATAGTGGTTTTAATTTTTCTAAACATACATTTCAATGTGGAGACAAATTATCAAAAGATATTTGTATTTTGGATTCTTCTCTTCCCTTGCGGACAAGATTGCTTAAGGCTCTGCTAGCTTTTATAGAGGTATCTGTTCCACCGGAAGCGTTTCAATCAAATTGGACAGAAGATATTAGGAGGCATTGGAGTATGAAGTTGAGCAAATCATCTTCTGTTGAGGAGCTGCTACAGATATTGACCCTACTCGAGAGAGCATTGAAGCGAGATTTTTTATCATCTACCTTCTCTACAACAAGGGAACAATTGGGATTGAATAGTATGTCTGAGAGTGCTGCACAAACCTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGATGCATCCATTGTCTACGTCCTGCATGAGAAACCTGAACCTTGTGAGGAAAAAAAAGATAGGGAATACATAAAGCTTCCTTCAAGATATAATCCTTCTAAATCTAGTAAAGTAGCTGAAGCAGCAGACTTGGACCGTGACAAATTCATAAAAGTTAAATCCACTCCCCTCAAAATTGTGCAAAGCAATAATAAACGAGGACGAGGGAGTCGTGATAAAGGACGGGGTAAAAAGCTATCTAAAACAAAACAAAATACAGGGCGTCGCAATGCTAAGGTTGCTGGGAGTACAAGTCAAAGAATAAAACAAGGAGTGGGGTCACAAGGACAAGCTGGTCGCAATGCTAAGGTTGCTGGGAATACAAGTCAAAGAATAAAACAAGGAGTGGGGTCACAAGGACAAGCTGGTGGGCGTGGCCGCCGAACAGTGAGGAAAAAAAGAGTGGGAAAGAAGGCTGTTGAAGATTTGGTACTGGGCCATAGGGATGCCTCTCATAGCTCCAGCACTCGGCGAGAATTATTGAGAAGCTTGGATGATGACTGGGATGATGAAAAGGCAAGTCCAATGACTCCCATCCATATGGGGGCCGCTAACATTAGTAATAGCACTGAAGAGGCTGAATCTGACGATGATGTCCAAGCCATGGAATCTGATGACAATGATCAAGCAATGGAGTCTGATGACAATGTCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAATCTGATGACAATGTCCTAGCAGTGGAATCTGATGACAATGGCCAAGCTGTTGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATAGTGCCCCTAGCAGCAGATGGAGTAGGAATTTGGTTGGAATGAGTGATGTGGAGGCTTCTGAAAATGACGATGATAATGACGATGGCAATGACGTTGAAAACAATGAAGAGGATGATTCAGATGCAGATGTTATGAGTGACGGTTCAGATGGTACTGCAAACAGAATTGTAAATGGAGAAAGCTCAGACTCGGATGACTCTGAAGATTCTTCTGATTAGAACATTGTTTTTAAGGCTGTATTAGATTTTTTTTTTCCTTCATTGCAGCCTTACAAGGTAGCTGAGCTCCGAGTCATGGCATGGCTTCCTTAGATTTTTATGATTGAGTAGACTAAATAGTGTATAACAGATAAACCCGCCCATTGCGTGGATTATTAAAAAAATTATTATACTAGAATAATCCAACAAAAAGAATTCAGAAGTTTGCCTTTTGCTCC 6166 0.4103 MEGEGCSEGENNRRRGATDDDSNENNNNNNNNVSSSKIMNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRQELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPQPQRKVPAEPLPESPRDGHRLAPELGNEYGSGSGSGSSPYARVEPPNVVLRGVSGYYESPKAMNMMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAAVTEQHKIPSFAYDSKIYERHDGRTNKAMARTLRDHQYLPSKSGIRSDAFGQFSQSHLHDSMEGPVRNPSFSHGSEQLPRIHATQGHSSRVRHLSHHDKQLIPYQSPSRDNDVAPQRELYPNTANVETNSHLTDRQIVGPENLYAPPSGQVLHNNAMRIEKKRKIEERTRKEMEKQDRERRKEEERLMRERQREEERAKREQKREIERREKFLLKENLKAEKMRQREELRKEKEAEKRKAALEKATARRMAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQHLESFRDSLSVFPPKSIKLRKPFAIKPWINSEKNVGNLLMVWRFLITFTDVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGVNQNGAANSGGGHPEIVEGAYAWGFDIRNWYKHLNLLTWPEIFRQLALSAGYGPQLKKRNITWSCTNDKDEGRSGEDIISTLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGKKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDVKLFERIAPSTYCVREAFRKNPADAESILSEARKKIQIFENGFLAGEDADDVEREESDSDEVDEDPEVDDLVNPSGANKTSEQCDDFSSNRKENLGHDVEVQGEFDKDLPCFPEHSSKKADAPFAVTGQPSACEDLNAGNLGEDNMEIDESKLGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLADAQLDKVRLKDETLNKSDPSINGNKVEIQYSCPVMEGKQSPLLDINIVNNNNVPSPSIVENQKAASGVQSLSIEKHSSVLDLCTGSDNPQIQSYAQHSKRSRSQMKSYISHIAEEMYAYRSLPLGLDRRRNRYWQFVASASSNDPGSGRIFVEYLDGNWRLIDTEEAFDALLNSLDSRGIRESHLRLMLQKFESSFKENVRKNTQSSKIGSRGETCVKNEVDETDSSPDRHTGSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKSALRRYQDFQKWAWKECYNSSILCAMKYGKKRCKPQVVICDICINSYFFEDSHCNCCHRTFPSNSGFNFSKHTFQCGDKLSKDICILDSSLPLRTRLLKALLAFIEVSVPPEAFQSNWTEDIRRHWSMKLSKSSSVEELLQILTLLERALKRDFLSSTFSTTREQLGLNSMSESAAQTSTDPESVAVLPWVPLTTSAVSLRLFEFDASIVYVLHEKPEPCEEKKDREYIKLPSRYNPSKSSKVAEAADLDRDKFIKVKSTPLKIVQSNNKRGRGSRDKGRGKKLSKTKQNTGRRNAKVAGSTSQRIKQGVGSQGQAGRNAKVAGNTSQRIKQGVGSQGQAGGRGRRTVRKKRVGKKAVEDLVLGHRDASHSSSTRRELLRSLDDDWDDEKASPMTPIHMGAANISNSTEEAESDDDVQAMESDDNDQAMESDDNVQAMESDDNVQAVESDDNVLAVESDDNGQAVEYDQGNWEIGFNSAPSSRWSRNLVGMSDVEASENDDDNDDGNDVENNEEDDSDADVMSDGSDGTANRIVNGESSDSDDSEDSSD 1796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03908 1796 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 34 384 IPR044977 GO:0006357
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1183 1231 - -
Pste3g03908 1796 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Pste3g03908 1796 Coils Coil 431 466 - -
Pste3g03908 1796 CDD homeodomain 49 103 IPR001356 GO:0003677
Pste3g03908 1796 SMART testlast3 535 594 IPR018501 -
Pste3g03908 1796 Gene3D - 31 105 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 273 292 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1721 1735 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1522 1537 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1600 1639 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1 57 - -
Pste3g03908 1796 ProSiteProfiles HARE-type HTH domain profile. 717 786 IPR007759 GO:0006355
Pste3g03908 1796 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1507 1796 - -
Pste3g03908 1796 SUPERFAMILY Homeodomain-like 34 103 IPR009057 -
Pste3g03908 1796 Pfam DDT domain 537 591 IPR018501 -
Pste3g03908 1796 Pfam HB1, ASXL, restriction endonuclease HTH domain 717 785 IPR007759 GO:0006355
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1538 1582 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 818 839 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 22 53 - -
Pste3g03908 1796 Coils Coil 372 425 - -
Pste3g03908 1796 SMART HOX_1 46 108 IPR001356 GO:0003677
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1742 1769 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1 21 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1195 1210 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 101 153 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 380 420 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1211 1231 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 816 860 - -
Pste3g03908 1796 MobiDBLite consensus disorder prediction 1656 1677 - -
Pste3g03908 1796 ProSiteProfiles DDT domain profile. 535 594 IPR018501 -
Pste3g03908 1796 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 924 965 IPR028942 -
Pste3g03908 1796 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1100 1171 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03908 Pste-Chr3 32225434 32236638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03908 4 1725 Homeobox Transcription Factor Family AT1G28420 46.171 0.0 1301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste3g03908 WSD 7.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03908 3 32225434 32236638 Pste3g03908 3 32225434 32236638 ECH
Pste3g03908 3 32225434 32236638 Pste2g02061 2 20780290 20795964 PCT