Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03889 TGCCTACACTGATAACAATGTCACCACAGAGGCACCCTCATGAAGTTCCATTGGAGTTTGCTCTAACAAATGACCACGAGCAACCCCACAAAGTAGAACAACTTGATGATGAAGTTGAGTCAAATGAAAGCCAGTTTTCAAGCGATAAGGATGAGGACGAATATATGGTTATAGATTTGGCAAATTTGAAGGAACTGCATTGTCCTATATGCCTAGGATTCATTCGAAAAACAGCAGTTATGATGGAATGCATGCATCGATTTTGTAGAAAATGCATAGAGAAATCACTACGTCTAAGTAAAAATGAATGTCCTGTTTGTCGGGTACATTGTCCTAGCCGGCGCTTCCTTAGGGATGACTTGAACTACGACGCATTAATTTCTACTTTTGTCCCAAATATTGATGAGTCTCAGAAACAGGAGGATTATGCTTCACAAGTAGATGAGAAGATTCATAATAAAGAGATCCAAGCTTCCAATGCCCAGACTCTTCAACCTCAAACCCAAGCTTTGGATAGGAAACAAAAAGCCAGGGCAATAGCATTAGCTTTTGAGAGAAGGAGGAGATCAATAGGAAAAGACTTGTCTTTTGGTGATGAGAACAAAGAAACCAAAACAAGTGAAGGTGGAGAAAAAGAAACCCAATTTCCACAAGAATTTGTCACAGTCAATGTAGATGGTTCATCTACACATGGTCATCGAAGTAACGCTCAAGTTAGTGGAGGGAATTCTATAAGTAATCGTCTCTCTAGATTTATTGATCATCTTCATAAATCGGATGTAAATGATGATGAGATTCCCCTCGTGCTTGTCTCTTTGGATAAGCAAAAGATACCAAGTTTGCACGAGGCATTACTTTCCTGCAGGCCTACTATGTCAATAAAGATATTGTCCAAGTATGTTGCACTTAAAGTTGAGTTGTTAGTCGATCAAGTTGAATTATACTTGGTAGAAGATTCACAAGTCAACATAATAAGAGGTGAATTAACCATTGATCCAGACAAGGACAAAGTGCGCATTCTAAGAGATGAAGAAACTTTGGTTGAACTATACACTAGGAATGTCAGGAACCCTGGTTTTCTGAGTATGGGGAGGGTTTTTGTTATTGAATTGGATGGCAGATCTTATGGATGCAAATTCTGCAATACCCCTCTTGCCCTCGCTAATCACATTCTTTCTCGGTCAAGGGAGAGCATACCTTTTCAGCAAAGTGTAATTATTATCGCACTTCATGTCAATCTTACATCAATATTTGTTCAATATTTTTTTATGATTGATATTTTGTGGTCTCACTTAACCAGGGTCTCCCCACCCTCAGGGTCCTTCCCCCACCCTAAAGCATCTACACCTCTATCGGTCTGGGGAATGGGAATGAAGCATATGGCATCCTTGATTGTTAACTTTTGCCTCTATCCTTGTTTGTTAACTTTTGCCTCTAATAGGGTGAATGTGACACTTGGGCCTCAGGTGGACAGAATGATGATGTCTGGACTGCACACCGTTGAAGACATATTTTGTTGCTGCTGTGGACAAATTCTTGGATGGAAATATGTTCTAGCACATGAAAAGAATGAAATATACAAAGAAGGGAAGTTTGTGCTTGAGAGGTGGACTATAGTTGACAGTGTTGAAGATGAGGACTTAAATTCGGATGTTCAAGGTGGCTCTCAAGCTGGTTCAAGTGACACAGAAAACGCTTAGCTAATGGCTTCTTTTTCATCAATTTGAAGTATTGTAGCTAGCAATTATATTATAGTATTATACCTTTTAGTGTCCTAGGTTGCAAATATATTATACCTTTAGTATTCATCAAGATACAATTTTACATAGAAACTCCTTAGAGAAACTTAAGCTTAGTTCATTTCCAGCATTTATAAATATTGCCGTAGCGCACATTGCTATATATTTATGAAGGGCATATAATTCATCTTATATTGAATCGAAGATCTTTATACTCTTCTTGATCTCAATAATTCAAATATATGTGTGG 1989 0.3826 MSPQRHPHEVPLEFALTNDHEQPHKVEQLDDEVESNESQFSSDKDEDEYMVIDLANLKELHCPICLGFIRKTAVMMECMHRFCRKCIEKSLRLSKNECPVCRVHCPSRRFLRDDLNYDALISTFVPNIDESQKQEDYASQVDEKIHNKEIQASNAQTLQPQTQALDRKQKARAIALAFERRRRSIGKDLSFGDENKETKTSEGGEKETQFPQEFVTVNVDGSSTHGHRSNAQVSGGNSISNRLSRFIDHLHKSDVNDDEIPLVLVSLDKQKIPSLHEALLSCRPTMSIKILSKYVALKVELLVDQVELYLVEDSQVNIIRGELTIDPDKDKVRILRDEETLVELYTRNVRNPGFLSMGRVFVIELDGRSYGCKFCNTPLALANHILSRSRESIPFQQSVIIIALHVNLTSIFVQYFFMIDILWSHLTRVSPPSGSFPHPKASTPLSVWGMGMKHMASLIVNFCLYPCLLTFASNRVNVTLGPQVDRMMMSGLHTVEDIFCCCCGQILGWKYVLAHEKNEIYKEGKFVLERWTIVDSVEDEDLNSDVQGGSQAGSSDTENA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03889 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 132 IPR013083 -
Pste3g03889 560 PANTHER OS11G0578200 PROTEIN 225 351 IPR044592 -
Pste3g03889 560 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
Pste3g03889 560 MobiDBLite consensus disorder prediction 187 207 - -
Pste3g03889 560 MobiDBLite consensus disorder prediction 1 44 - -
Pste3g03889 560 MobiDBLite consensus disorder prediction 12 44 - -
Pste3g03889 560 ProSiteProfiles Zinc finger RING-type profile. 62 102 IPR001841 -
Pste3g03889 560 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 371 532 IPR004910 -
Pste3g03889 560 CDD RING-HC_RING1-like 59 124 - -
Pste3g03889 560 Pfam Zinc finger, C3HC4 type (RING finger) 62 101 - -
Pste3g03889 560 SUPERFAMILY RING/U-box 49 109 - -
Pste3g03889 560 SMART ring_2 62 101 IPR001841 -
Pste3g03889 560 MobiDBLite consensus disorder prediction 187 206 - -
Pste3g03889 560 ProSiteProfiles Yippee domain profile. 434 537 IPR034751 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03889 Pste-Chr3 31833200 31850903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03889 60 248 C3H Transcription Factor Family AT2G30580 24.631 1.97e-07 51.2