Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03879 ATGGCAATGGCAACAGCAACAGTGACAGTGTCAGTGTCTTCAGCTTTGAATTCTCTCTCCATCTCGAGGTCCTCAGGCTTCACTCTCCTCCCTTCACCACCCAACAAACTCTCCCTCAAACCCCTTCAGGGCAACTTTGTCCTGTCCCTGAAATCGAAACCCTCCGACGACATCGACACCTCTTTCTTCGACAACCTGAACCCGCAGGACGACATCAGCTTCAACCCCCCGGAGCCCCCGGAGGGGTTCGTGGCCCCGCTGTCCTTCGACGACGGCCCTCCCGAGACGGAGGACGAAATCGCCGCCGCCTACGAGGAGCTGTACGGCCCCGCCTACAGCGGCGTGTCCCTCCTGGGCAATGACATCTACGTCATGGACTCGAAGGAGAAGAAGGAGACCGGCTTCGGGTCCGCCTCCAAGCAGGAGAAGATTCGCGACGGCTTCGAAGAGAGGGTGGTTCAGGTTCGCCGGGTCACCAAAGTCGTTAAGGGTGGCAAGCAGTTGCGCTTCCGGGCTGTTGTCGTTGTCGGCGACAAGAATGGCCAGGTTGGTGTCGGTGTTGGCAAAGCTAAGGAAGTTATTTCTGCCGTTCAGAAGTCCGCTGTTAATGCCCGCAGGAACATTGTCCAGGTTCCTATGACTAAATCTGAAGCAAACTATGGAGCGGCCAAGGTGATGCTTAGACCTGCCTCTCCTGGTACTGGAGTTATTGCAGGTGGGTCTGTCAGAATTGTTCTTGAAATGGCTGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGCAATAATGCACTCAACAATGCCAGAGCCACCATTGTTGCTGTCCAGAAAATGAGGCAGTTTCGTGAGGTTGCTGAGGAGCGTGGTATTCCAATGGAAGAATTATGGAAGTAATCAAATTCGTCAAGCCTGTGTAATTTTTGGATGTCAATCTTTGTGATATAGAGCTCATCCTAGTTCTTCTTGTTAAGAAATTGAAACAATGTTCTTTTTTTGTTGAAATTTTTCTGAAAGTGAACAGTTTCTTCAAAAAGCTACTTGTTCGGAATTCAGATTGAATTATATTTATTCTTTATCTACCTGTGTGATTTGTATTTATGGTCGTTCAATTTATGCTTGGATTCAGTTGAGG 1132 0.4956 MAMATATVTVSVSSALNSLSISRSSGFTLLPSPPNKLSLKPLQGNFVLSLKSKPSDDIDTSFFDNLNPQDDISFNPPEPPEGFVAPLSFDDGPPETEDEIAAAYEELYGPAYSGVSLLGNDIYVMDSKEKKETGFGSASKQEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKNGQVGVGVGKAKEVISAVQKSAVNARRNIVQVPMTKSEANYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATIVAVQKMRQFREVAEERGIPMEELWK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03879 297 Hamap 30S ribosomal protein S5 [rpsE]. 125 294 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pste3g03879 297 NCBIfam 30S ribosomal protein S5 147 294 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pste3g03879 297 FunFam 30S ribosomal protein S5 137 209 - -
Pste3g03879 297 Pfam Ribosomal protein S5, N-terminal domain 148 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste3g03879 297 SUPERFAMILY Ribosomal protein S5 domain 2-like 216 289 IPR020568 -
Pste3g03879 297 Gene3D - 212 296 IPR014721 -
Pste3g03879 297 Pfam Ribosomal protein S5, C-terminal domain 219 288 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pste3g03879 297 ProSiteProfiles S5 double stranded RNA-binding domain profile. 148 211 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste3g03879 297 Gene3D - 139 209 - -
Pste3g03879 297 FunFam 30S ribosomal protein S5 211 297 - -
Pste3g03879 297 PANTHER RIBOSOMAL S SUBUNIT 141 296 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pste3g03879 297 ProSitePatterns Ribosomal protein S5 signature. 165 197 IPR018192 -
Pste3g03879 297 SUPERFAMILY dsRNA-binding domain-like 144 213 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03879 148 281 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 1.76e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03879 3 31436444 31437740 Pste3g03879 3 31436444 31437740 ECH