Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03860 ATGGCCATTGAGCACCTCGTTTCGCAGGAATGGAAAACTACTGCAAATCCCGTGACAGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAATATCTGCTTAGATTTTGCACATGAACCAGTTGTCACCCTTTGTGGTCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATATACAAAGTGCTTCTCTTGCACCAGATGAGCACCCCCAGTGCCCTGTTTGCAAGGATGATATATGTCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAAGCCACAGCTTATAGTGACCGTGAAGTGAAGACATCCTATAGAGGCGTTTTAATACCACCAAGACCACCTGCTTTGGGTGCTCAAACTCTCATGGCAACATCATCTCAAAGTGGTCAGCAACTTCCATATCGCAATCCTTATCAGAATCAGCATTTCAACCCTCCTTTATACCAAGATGAGGATGAATCATCATCACAAATGCTCAATCCTTCTGCTATGGTAGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCAGAGTTTTTGGCAACTCAGAAAATTTATTCACCCACCAAAATTCTTATCACCTGACGGGAAATAATAGCCCCAGGTTGAGAAGGCAAGAGATACAGGCCGACAAATCATTGAACAGAATTTCAATTTTCCTCTTCTGTTGCTTCCTTCTCTGTCTTGTCAGCTCGATTTTTCGAGAAGTCACTCTATATGAATATCGAGATGCTGTATTGTACTGCACCCTATTCTATGTCATGCTACAGTTGGTACCTTTAAGATCCATCACCCCAATTGTGGTTTTCCATGTAGGCCTATACAATTTCACTTGCCTAGTTCAAAATTTTGAGTGCTTGTTGCTTGAAGAAAACATATCAATCCGACCAAGATGA 921 0.4332 MAIEHLVSQEWKTTANPVTVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHIQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQATAYSDREVKTSYRGVLIPPRPPALGAQTLMATSSQSGQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPSAMVAPGFPHLVVGMFGEMFYTRVFGNSENLFTHQNSYHLTGNNSPRLRRQEIQADKSLNRISIFLFCCFLLCLVSSIFREVTLYEYRDAVLYCTLFYVMLQLVPLRSITPIVVFHVGLYNFTCLVQNFECLLLEENISIRPR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03860 306 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pste3g03860 306 SMART ring_2 30 76 IPR001841 -
Pste3g03860 306 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pste3g03860 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste3g03860 306 CDD RING-HC_AtRMA-like 28 77 - -
Pste3g03860 306 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pste3g03860 306 SUPERFAMILY RING/U-box 22 89 - -
Pste3g03860 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Pste3g03860 306 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03860 Pste-Chr3 31077663 31078694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03860 6 226 C3H Transcription Factor Family AT4G27470 38.053 1.39e-45 153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03860 3 31077663 31078694 Pste2g01989 2 20100170 20105342 PCT