Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03858 ATGAAGCAATTCTCATTATCATCATCATCAACAACAAGCATGGGTGATGATGATAGTGTGTTGAAGCTGAACCTTGGTTTAGGCAACAACAGTTTTGGTTGTCATGTAGGGCAATCACCGAGGCAAAGGTGCCCTGCACCGTTTTTGTTGAAGACCTATGATTTGTTGGAACAAGGTGATGATAGCACCAAAATTGTCTCGTGGAATGCTGAAGGAACTGCCTTTGTTGTGTGGTCTCCTGCTGAGTTCTCTGAACTCACCTTGCCTAAATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTCAAGAAAATATCATCCAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGTAGGCACAAGCTAGGTGAAATCACTAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTTCTTACCTCAAGTCTTCTTCTGAGGAAAATGCAACGAGTTCCACAGAAGAAAACAATCAGCAACTTCTTATGGAGGAGAACAAGAACCTAAAGAAAGAGAGATTAGAGCTGCAAATGCAGATAGATGAATGCAAAGCACTTGAAATAAAGTTGTTGGCATGTCTCTCTCAGTATATGGACACCCAACAAAATAAACTTAGGAGACTATGTTAA 651 0.4071 MKQFSLSSSSTTSMGDDDSVLKLNLGLGNNSFGCHVGQSPRQRCPAPFLLKTYDLLEQGDDSTKIVSWNAEGTAFVVWSPAEFSELTLPKYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHKLGEITRKKCEPSVFPSYLKSSSEENATSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEIKLLACLSQYMDTQQNKLRRLC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03858 216 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 42 190 IPR027725 -
Pste3g03858 216 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Pste3g03858 216 FunFam Heat stress transcription factor A-6b 41 139 - -
Pste3g03858 216 SMART hsfneu3 44 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 Gene3D - 40 139 IPR036388 -
Pste3g03858 216 Pfam HSF-type DNA-binding 48 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g03858 216 Coils Coil 159 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03858 Pste-Chr3 31044545 31046882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03858 36 208 HSF AT5G62020 36.232 3.98e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste3g03858 HSF_DNA-bind 4.8e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03858 3 31044545 31046882 Pste3g03858 3 31044545 31046882 ECH