Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03857 ATGCCAGCTGTACAAGGAAGTGTAAGTTCCTACGACATTCATGTGATTACAGAACTCATGGTGAAGCCTAAACCCGGAGACTTATTGAGAGTGGATGTGACTGTTATTGTTCGATATCATACAAATTATTTTCATCATGTCGAACTTGAAGCAGAATCAACCTTATTGGAAACCTCGATACCGATAACCTGTGAAAGCTTCTTGGAAAATAATCAAGATTTTCTAGAAAGTTTTTTATCCAATGATCCAATGTGCTCTGCCTACTTCATCCCAGAAAGCCTCCATGAAATATCAGAAGAGGTCGTTTCTTTGGCTCAAACACTCTTTCGTTCAAACAGAGATGATCCTGAATCTGATTCACAATGCAGAGGGTTTCCTTTGAAATTACACATTGCGATGGACGTGGTAGAGGATGGAGAGAGCTATGAGGATGAAGAGACGGAACATGCAATCATACAAGAGTCCATGCAACAAGCCGTTACAATGATTCCTGCCTCCGATGATGCCTTCAACTTGTTGAAACCATTCGTTGATTCTCTCTTCCTCAAAACTGAAGTGTGTAATGTTTGTTTGCAAAAGTTTTGTGTTGAAGATGTCAATTTGCCATCATCATCATCTTCTTCTTCTTCTTCTTCGTCAATGCCATGCGGTCACGTGTTTCATCATCACTGTATTGTGAAGTGGCTGCAATTAAGTCATGTGTGTCCCTTGTGCCGCTACCCTATGCCTACTTGCAATCCCTACTTCATACCAGAAATCCTTGATCAAATATCACAGAGGATTGTTCCTATGGTTCAACGAGTCTTGGAGGTTCGGACTTTCCCTTCTGATTCTGAATCTGCAGACTCGGAATGCCAAGAGATTCCTTTTGATTTAAACATTCTCGTGCATCTCATTGAAGAAGAAGAGAGTGAAGAGGGTAATGAAGAAATGGAAGATGAGCTTGCATTCATAGAAGAATCCATGCAACAAAGTGTCATGATGGTTCCTGCTTCCACTGAAGCCATTAACTCTTTGACCCCGCTTATAGATCCACTTCTTCTCAAAACTGAAAACTGTAGCATTTGTATGGAAAAAAATTGTGGTGAAGAGAGTGATAATGGAAACATCAAGTTGTCATCGACTTTCATGCCATGTAGGCATGTGTTTCATCATCAATGTATTGTGAAGTGGCTGCAAACCAGTCATGTGTGTCCCTTGTGTCGTTATCCCATGCCCAAAGCTAATTAA 1230 0.4073 MPAVQGSVSSYDIHVITELMVKPKPGDLLRVDVTVIVRYHTNYFHHVELEAESTLLETSIPITCESFLENNQDFLESFLSNDPMCSAYFIPESLHEISEEVVSLAQTLFRSNRDDPESDSQCRGFPLKLHIAMDVVEDGESYEDEETEHAIIQESMQQAVTMIPASDDAFNLLKPFVDSLFLKTEVCNVCLQKFCVEDVNLPSSSSSSSSSSSMPCGHVFHHHCIVKWLQLSHVCPLCRYPMPTCNPYFIPEILDQISQRIVPMVQRVLEVRTFPSDSESADSECQEIPFDLNILVHLIEEEESEEGNEEMEDELAFIEESMQQSVMMVPASTEAINSLTPLIDPLLLKTENCSICMEKNCGEESDNGNIKLSSTFMPCRHVFHHQCIVKWLQTSHVCPLCRYPMPKAN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03857 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 245 IPR013083 -
Pste3g03857 409 Pfam RING-H2 zinc finger domain 351 402 IPR024766 GO:0008270
Pste3g03857 409 Pfam RING-H2 zinc finger domain 186 239 IPR024766 GO:0008270
Pste3g03857 409 SUPERFAMILY RING/U-box 186 245 - -
Pste3g03857 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 408 IPR013083 -
Pste3g03857 409 ProSiteProfiles Zinc finger RING-type profile. 353 402 IPR001841 -
Pste3g03857 409 Coils Coil 301 321 - -
Pste3g03857 409 SUPERFAMILY RING/U-box 352 406 - -
Pste3g03857 409 ProSiteProfiles Zinc finger RING-type profile. 187 239 IPR001841 -
Pste3g03857 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 298 406 - -
Pste3g03857 409 SMART ring_2 353 401 IPR001841 -
Pste3g03857 409 SMART ring_2 187 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03857 Pste-Chr3 31037985 31042742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03857 318 406 C3H Transcription Factor Family AT1G18760 33.333 2.03e-10 58.5