LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03842	CACAGTTGGACCAAATGAGAAAGCAATACAAAGAAGCAGAGAAAGTCTTTTATGTTATGTTTTGTTATGTATTGTGTTGTGAACTGTGACCACACCGCGGAAAAACCAAACCAAGAACAGAAACAACTTCTTTTTACCATTATTCGTTCACCCTTTTCTCAACCCTCTTTCCCATCTCTCTTCTATTTTTCTACCCTTGCTATTTAACTACCCAACTCTCCTTAGTCCTTAAGACTTGTGAATTTTTTCTTTTTTAGCTTCCAAAGGTGATCATATTTTTTTACTTTTCTTTTTCTCCTTGTTTCCCAAAAGGGGTTCCTGCCCCAAATGGGGTTCCGGTGTGTTTCACATGTTAAAGGCGTGGTCTTTCTGTGTTGTAAGCTGAATATGAGCTGAATTTGCAAATGAATTTTCTTTTCTCTTGGTACTCCAATCAGATTGCGATTTGGGGTCCTTAAGCGAAATGGTCCAAAAATTTTTGGTGAATTGTGATGAAAATGGAAAATTTTTCAAACTAGAGTAATCCTTCTGTTTAGTTCGGTGGTTTTTGTCTGTCCTAAATCTTGTAAAGGATCTAAGGTTCGATCACCGATTGAGCAGAAAGGAATTATAACAATAAAAATAATTAACATGAAGCAATTGACTTTTATTGAAATTTCTGGTATTGAGTCCATGTAATTAGGTTCGGTTTCTCATAATTTTTAATATTCCTATCCCAGAATTTTGCCAAGTGCATAAATCCGTGTCAAGTTGTTAAGCAAAAGCCTAAACCATTTCAGTTGAGCATATTGTTTATTCTTCCTTGTCAAAGTGTCTGCTTGAGTTCCATGCCTTTGCATGGCTCTGTCTCTGGTGTTTGCAATTAAAATGTACAAATGGCATTTCACTTATGTTGAAATTTGGTATGTGATGCAGAGTGTAGTAGTCAGATCCCAGGATCATTATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGAAATTCTTCTCATATTCCTAATGAGATTGATGGTTTTCCACTTGATAATGTTAAGCATTTCTCTGATAAAGACCTGAAATTGGCCACTGATAACTATCATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGAGAGGTTGCAGTGAAGACACTTTCAGCAGGGTCAAAGCAGGGAGTTCGTGAATTTTTAACTGAAATTAAAACTATATCAAATGTTAAGCATCCTAATCTTGTTGAACTGGTTGGTTGTTGTGTTCAAGAACCTAATCGTATATTAGTGTACGAATATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCTCAAGAGGTTCAAGTATCAGATTAGACTGGAGAAAAAGATCAGCCATTTGCAGGGGTACTGCTAGAGGTCTTGCATTTCTTCACGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAGGCAAGCAACATACTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATCAGCACAAGGATTGCTGGAACAACTGGATACTTAGCACCAGAATATGCAATGGGAGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCTAGGACTAACTGGGGAGGGTCCAACAAGTATCTTTTGGAATGGGCCTGGCAACTGTATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCGGACATGGTTGAATTCCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAGGTTGTTGATATGCTGTCCAAGAACATAAGGCTTAATGAAAAGCAACTAACTGCACCAGGGTTTTTCCAGGATTCAGGAGCATCCTCTCAAAAGAAGTCATCCTTTGAATCCACAAGCTATCAGTTTAGCTCTAACCCTTCCAATATTACTCAGTTGGCCCCACGGTGAAGCATAAACCAAGTTTGTGATGTGTGAATTGCAAAGTTAAAAAATGGTAGGAAAGAAAGAGAGAAACAAAAGAACAAAGAGGGATTTTCTTCTTTTTTTTTATTTTACATTTTTCTCTTTTTTGTACATTATTTTTTAAGAATGTATTATAAGATGGCTTGTATAAGTTTTTTTTCTTTGAAAAAAAGTGGTTTTGTAATATTGTTTTTTAATAGATTTTTCTAAGTAATTTTATTTTCTAATTTATGATTAAAAAATCATGTTTGGGC	2316	0.3722	MSCGCFGASTLKKKRNSSHIPNEIDGFPLDNVKHFSDKDLKLATDNYHPSKKLGRGGFGTVYQGTLKNGREVAVKTLSAGSKQGVREFLTEIKTISNVKHPNLVELVGCCVQEPNRILVYEYVENNSLDRALLGSRGSSIRLDWRKRSAICRGTARGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIVSGRSSARTNWGGSNKYLLEWAWQLYEEGKLLELVDPDMVEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKNIRLNEKQLTAPGFFQDSGASSQKKSSFESTSYQFSSNPSNITQLAPR	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03842	367	SUPERFAMILY	Protein kinase-like (PK-like)	31	354	IPR011009	-
	Pste3g03842	367	CDD	STKc_IRAK	53	319	-	-
	Pste3g03842	367	PIRSF	ILK	8	329	-	-
	Pste3g03842	367	Gene3D	Transferase(Phosphotransferase) domain 1	123	333	-	-
	Pste3g03842	367	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	123	329	-	-
	Pste3g03842	367	Pfam	Protein tyrosine and serine/threonine kinase	50	317	IPR001245	GO:0004672\|GO:0006468
	Pste3g03842	367	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Pste3g03842	367	MobiDBLite	consensus disorder prediction	334	367	-	-
	Pste3g03842	367	ProSiteProfiles	Protein kinase domain profile.	47	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03842	367	FunFam	cold-responsive protein kinase 1	18	122	-	-
	Pste3g03842	367	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	351	-	-
	Pste3g03842	367	SMART	serkin_6	47	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03842	367	Gene3D	Phosphorylase Kinase; domain 1	20	122	-	-
	Pste3g03842	367	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03842	Pste-Chr3	30743290	30747733	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03842	35	366	Receptor kinase-like Gene Family	AT1G56120	51.506	6.15e-109	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste3g03842		PK_Tyr_Ser-Thr	4.3e-47	CL0016