Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03801 AAAGAAGAAAAAAAAAAAGAAGTGAGAAAGGTAAAGGAAAAAGGGTTGGTTTGTGAGTGGGAAGTGGGAAGTGGGAAGTGGGAAGTGAGAAGGTGTAGTGGTTTGAAGCATCAAGGCGGGATTGGCCACTGGCGAGGCATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTTGAAATCAGGGTTCAGCCCTCAGATACTATTATGGCTGTGAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCTTGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACGTTAGCAGACAACAAGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCACGTCTCTAGTACAATCTCAATCTGCAAACAATGCATCTGCAACAGATTTCACAACTACGAATGTCACTACAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGCTAGTAATCTTGAGCAGACTATTCAGCAAATTATGGACATGGGTGGTGGAAGTTGGGACAGAGAGACAGTTACTCGTGCTCTTCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCGGAAATTGCTGTGCCAGCTGCTCCTTACCCAATTAGTCAGACAACTGTAACAGGTGGGGTCACTGCTGGAGCTGTTCCTGGGGTCCCTAATTCTTCTCCGTTGAATATGTTTCCGCAGGAGACAATTTCTGGTGCTGGAGCTGGAGTTGGATCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGGTCAATGGTGCAATCCAATCCACAAATTTTGCAGCCTGTACTTCAGGAACTTGGAAAGCAAAATCCTAGTCTCTTGAGACTTATTCAAGAGCATCATGCTGAGTTTCTCCAGTTGATTAATGAACCTGTTGAAGGTTCTGAAGGTGACATGTTTGATCAACCTGAGCAAGACATGCCTCACGCAATCAATGTGACACCAGCGGAGCAGGAGGCAATTGGAAGGCTCGAGGCTATGGGATTTGATAGAGCCTCGGTCATCGAGGCATTTTTGGCATGCGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGATTAAATCACTAACCTACATTGATTTTTGTTTGACCATTCTTTTTTTTTTTTTTTTGGG 1254 0.4378 KEEKKKEVRKVKEKGLVCEWEVGSGKWEVRRCSGLKHQGGIGHWRGMKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKPASNPPITVSTPNSTSLVQSQSANNASATDFTTTNVTTDTYGQAASNLVAASNLEQTIQQIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPISQTTVTGGVTAGAVPGVPNSSPLNMFPQETISGAGAGVGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLRLIQEHHAEFLQLINEPVEGSEGDMFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03801 399 NCBIfam UV excision repair protein Rad23 47 398 IPR004806 GO:0006289
Pste3g03801 399 SUPERFAMILY Ubiquitin-like 47 133 IPR029071 -
Pste3g03801 399 Gene3D - 169 219 - -
Pste3g03801 399 SUPERFAMILY UBA-like 173 223 IPR009060 GO:0005515
Pste3g03801 399 SUPERFAMILY XPC-binding domain 272 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste3g03801 399 SMART CBM 272 315 IPR006636 -
Pste3g03801 399 CDD Ubl_Rad23 47 120 - -
Pste3g03801 399 SMART ubq_7 47 121 IPR000626 GO:0005515
Pste3g03801 399 Gene3D - 264 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste3g03801 399 Pfam UBA/TS-N domain 355 390 IPR015940 -
Pste3g03801 399 Pfam UBA/TS-N domain 176 214 IPR015940 -
Pste3g03801 399 SMART uba_6 176 216 IPR015940 -
Pste3g03801 399 SMART uba_6 355 392 IPR015940 -
Pste3g03801 399 Gene3D - 43 122 - -
Pste3g03801 399 ProSiteProfiles Ubiquitin domain profile. 47 125 IPR000626 GO:0005515
Pste3g03801 399 SUPERFAMILY UBA-like 333 396 IPR009060 GO:0005515
Pste3g03801 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 174 217 IPR015940 -
Pste3g03801 399 Pfam Ubiquitin family 49 122 IPR000626 GO:0005515
Pste3g03801 399 FunFam UV excision repair protein RAD23 B 264 330 - -
Pste3g03801 399 FunFam UV excision repair protein RAD23 homolog 346 394 - -
Pste3g03801 399 CDD UBA1_Rad23_plant 170 219 - -
Pste3g03801 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 393 IPR015940 -
Pste3g03801 399 FunFam UV excision repair protein RAD23 homolog 169 219 - -
Pste3g03801 399 Gene3D - 346 394 - -
Pste3g03801 399 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Pste3g03801 399 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Pste3g03801 399 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Pste3g03801 399 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Pste3g03801 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 47 388 - -
Pste3g03801 399 FunFam UV excision repair protein RAD23 47 126 - -
Pste3g03801 399 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03801 Pste-Chr3 30258395 30263506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03801 47 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 2.96e-08 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03801 3 30258395 30263506 Pste3g03801 3 30258395 30263506 ECH
Pste3g03801 3 30258395 30263506 Pste6g00159 6 515127 524225 PCT