Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03799 GAACGGTGAACGGTGAACGGTGATAGTGATATAAAAAGTGTGGTAGGAAGAGCTTAGAGCAGTTGTTATGGTATGAGCATTGATGGCTAAGACGACGTCACAGAAGAAGAAGAAGCGGGAACGAAGCTCAATCTACCGGGGAGTTACAAGGCACCGCTGGACGGGTCGATACGAGGCTCATCTCTGGGACAAGACTTGCCGGAATGAATCGCAGAACAGGAAAGGAAGACAAGGGGCATATGATGATGAAGATGCGGCAGCACGTGCCTACGACTTGGCAGCATTGAAGTACTGGAGCCGAGACACCATCCTCAATTTTCCGCTATCAAATTATGAAGACCAGCTTAAGGAGATGGAGAGTCAGTCTAAGGAGGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCCCGAGGAGTCTCAAAATACAGAGGTGTCGCAAGACACCATCGGAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACTTACGGTTCAGAAGAAGAAGCGGCTATGGCGTATGATATGGCGGCCATAGAGTACCGTGGACTTAATGCAGTTACAAACTTTGATCTTAGTCGTTATATGAAATGGTTACGTCCAAAAGCCCAAGACAAAGTTGAAACCCAACATCTGAGCCCAACCACAAGCTCTGGATCTGGAAATGCCTCCTCCACAACATTGGGCCCACTTGCTGCTCCACCACCACCTCCTTCACGTACATTTCCCGAATATATTCAAACCTTTTTTGAAACTCAAGATTCTGGAATCTACACAGACACCGATGACATTATATTTGGTGACTTCGCCTCCATTGCTTCACCTATTTTTCATTCTGACCTTAATTAG 880 0.4591 MAKTTSQKKKKRERSSIYRGVTRHRWTGRYEAHLWDKTCRNESQNRKGRQGAYDDEDAAARAYDLAALKYWSRDTILNFPLSNYEDQLKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHRNGRWEARIGRVFGNKYLYLGTYGSEEEAAMAYDMAAIEYRGLNAVTNFDLSRYMKWLRPKAQDKVETQHLSPTTSSGSGNASSTTLGPLAAPPPPPSRTFPEYIQTFFETQDSGIYTDTDDIIFGDFASIASPIFHSDLN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03799 265 Gene3D AP2/ERF domain 115 176 IPR036955 GO:0003700|GO:0006355
Pste3g03799 265 Gene3D AP2/ERF domain 17 82 IPR036955 GO:0003700|GO:0006355
Pste3g03799 265 CDD AP2 115 176 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 200 - -
Pste3g03799 265 SUPERFAMILY DNA-binding domain 16 82 IPR016177 GO:0003677
Pste3g03799 265 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 SMART rav1_2 17 86 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 FunFam AP2-like ethylene-responsive transcription factor 16 82 - -
Pste3g03799 265 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 PRINTS Ethylene responsive element binding protein signature 156 176 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 ProSiteProfiles AP2/ERF domain profile. 17 80 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 MobiDBLite consensus disorder prediction 189 220 - -
Pste3g03799 265 SUPERFAMILY DNA-binding domain 115 176 IPR016177 GO:0003677
Pste3g03799 265 FunFam AP2-like ethylene-responsive transcription factor 115 176 - -
Pste3g03799 265 Pfam AP2 domain 115 166 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 Pfam AP2 domain 17 72 IPR001471 GO:0003700|GO:0006355
Pste3g03799 265 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03799 Pste-Chr3 30233146 30245489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03799 13 225 AP2-EREBP Transcription Factor Family AT5G57390 61.468 1.75e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pste3g03799 AP2 6.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03799 3 30233146 30245489 Pste3g03799 3 30233146 30245489 ECH