Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03772 ATGAGTTGCATAAAAAGAGGAAGTGGGTCCATTGGCAGGGAGAAAGGCGCAAAAGAGGATTATATAAATGAGTGGAATGGTAGCAGTGGCACCCTTGAGCAACAAGTTTCAGGTTCCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTGGGAACGTTTGAAACGGCAGAGGATGCAGCTAGAGCGTACGATGAAGCTGCAAGGTTGATGTGCGGCCCAAAAGCACGCACCAATTTCCCTTATAATCCTAATGACCCACACTCCAATCTCCTCTCGGCTACTTTGACTGCAAAGCTACACAAGTGTCACATGGCATCTCTTACTCTGACCAAGCAGAAGCAATCGCACAAAGAGTCTCAAGACATTGCGGGAACAAGTGCTTGGCCAGACAAGATACACGACCAAGGCCAAGTTGAAGTCCCACACCAACAATTTCATCCCGTTCTTCAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGCTCAATGGAGCTTTCTTCTGTTCACTCTGCCTGAGCCTTATTCATCTATAAATGTCGTAGCAACTCCCAAGCACACCCCTTTTCATGGAGCCTCCTTGTAATAAAATATAGTGATGACCTTTAGTACCATAGCAGGCTTTCACCATCAGTTTCAATCACTTCTCCAATTAATGGTCAAGCATGTGCAACCAGAATGTAATCAACGCATGCATACATCATCTGGACTATATCATAGATAGC 803 0.4583 MSCIKRGSGSIGREKGAKEDYINEWNGSSGTLEQQVSGSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNDPHSNLLSATLTAKLHKCHMASLTLTKQKQSHKESQDIAGTSAWPDKIHDQGQVEVPHQQFHPVLQDDHIEQMIQELLDYGSMELSSVHSA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03772 198 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Pste3g03772 198 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Pste3g03772 198 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pste3g03772 198 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Pste3g03772 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 141 - -
Pste3g03772 198 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Pste3g03772 198 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Pste3g03772 198 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Pste3g03772 198 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pste3g03772 198 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03772 Pste-Chr3 29900099 29901046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03772 40 195 AP2-EREBP Transcription Factor Family AT5G25190 63.842 7.97e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g03772 AP2 8.6e-12 CL0081