Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03736 ATGTTAGGCCGCGGCGCACGACTTCTTAACGTGCACCGTTCCGACGAAAAGTTGAACCTTCGTAGAAGCCGTCACCGACTCTCCGGCTCTTATGGTGCTGATGTGATGGCGGATGATGACGTTGACTTTTCGAAACTGTTCTCTGCCAATGGTGATGGCGACGACGACATGTTTTATATAGACATTCAGACTGTTCAGAAGGTTCTTGATGAAGACGATAATTATGACTTTCAGGAGCTGAATATTCCTGAAGATTCTTCATCAAAAACTGTTTCACCTGGTGAATCTGGCATTGATGACACTTTTCGGATACAAAATGGGCCTCAAGTGTTAGAAGAATCACATTTTTCTAGGTTGGGCTTTGCAGATTCTATCAGCTGTTCATCGTGCTCAGATGTGTCAGATTCAGGGGTCAGAGGTTCAGTTGGTGTATCTGATATTTCTGCAAATTCTGGGCTTGATTGTGAACGTGAAAACCTGGGACATCAATCTCAGGCTGGCTCTTCTCCAAATGATTTTCCTTGTAATTTCAGTTGTTCATTTTCTCCATGTGAAAGTGATGAAGTCTTCTGCACCGATAGGACCAGAGTTTCTAAACATGAGATACCTGCATATGGTGTTGAAACAAAAGCTTCACTCAGTTCTATTGTTGACAATGATTGTTATGTTGAAGACATCATTGGGGGAGGTTTTGGGCAACATGAGAATGATACATGTGCATATTTTGAAGCATCGTCTATGGATGCTGATAGATCTTTGCATGTTGCAACTTCAACTGATTTTACTATTGGTCAAGGTTCCCATGTTTCCAGTGATGACTACCACGTATCTTCAGATTATTATCACGGCACACATGATGATGGACCCTTTGTTGCTCGCTCAGCTCTTGGTTTTTTGCCAAATAATATTTATTCTCAACTGCGGCCAAATGAAGAAATGATGAATAATAACATGAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATGTATGAGTGATGGCATGCCTTCAAGCACTTCTGGGTGGAGGTCTTTTCAAGACAGTCAAATTATGTTAGATAATGGTTATTCATTATTTCATTCTGGTAAAGTTATTTTTGAGGACATGCCATCATTGTCTCTTTCAGCGTGTACTTCATACATGTCATATGGAGACCATTATCAAAACAATTTTTGTCAAGAGGATGCTGAGTTCAATGTAGGCCAAGAGGTGAAACAAACACCTGGACTTTTTTCTTCTGTAGGGTGTCAGGCTTCTCAATGTTTTGAGAATGAGGATAATTATGCAGTTATATCAGGGATATCTAATCAATTTCAAGATAGCATTGGAGGAACTAGTTTTCAAGAAACCATGGGCAATTTGAATTTAAAAGCTGCTGATATATCTTGGCCATGTGCCCAAGCACTAATTACCAGCGAGAAGCCGTTTGGTTGTGTTGAGAGAGGAGGGACTCAATGTAAACTTCTTGATTCTTGTTTTTCAAAAGGAAGAACTGAGAATTTCCATGTAGAGGAAGACCCCGATGTTTGCATTATTGAAGACATAAGTCATCCTGCTCCAATGAGTCAATCTGCAAATATTGGGAATTCATTTAATGTATATCATTCTTCTAGGTATGTTGATTCCCAGTCTTACATGACTGGAAGTACAAATCTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGTATTGCAGGATCTATCTCAACCAAGGTCAGAAGTTAGTCCACCAGAAGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTGTCTTGGATGGTTCAAAAGGAAGCATCAAGTTCATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACGGTATCAACTATTGCATTAATATTAAAGGAAAGATCTCCATTACTTAATGGATGCACCAATACCCTAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGACGATGACATGCTTCCTCAAAATGCTAGAGTAAAGGAAGAATCTAATATCTGTGAGGACAAGTCAAGTAGATATCCAATCAAGAGCATGAATTTGTTGAAGCAAGCTAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGAAGCAAGGTAACTAGTCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAAGCGGACAAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTAACGACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGGCTCCAGCTGACAAAGATGATGAGGAAAAAGAAATTTCTGAAGATCATGCTGTACCAAGTAGGAAAAGAAAAAACCCTTCTAGTTCTAGTAAAAATGGCAAGAAGAAATTGGATGGCACAATTCTTGAGGCTGTTGCTCGGCCACTTGCTAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCATGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATACAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGATGTATATACATCGTTTTATACTGGAATCAAGAACCCAATTAGCAGAAATCCAACAAATGGATATAGTAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGTAGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAAGTTGATTTTTCAATGGAAGAACGTAATTTTTATTCCAAATTAGAGGCTGATTCACGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTCTCAAGGAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAAATATTTCTTCTAAAATGTTTAGGGGCTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCCGAAGATGCAGTGGTTTCAATTTGTGGCCATGTTTTCTGTAACCAATGCATTTGTGAACATCTCACTGGTGATGACAATCAATGCCCTGCTGCAGATTGCAAAAGTCAACTGAGCACATCTATGGTATTTTCAAAAGCCACATTGAAGAATTGTCTTTCTGACCAAGGTAGTGATAATTCGCCCAGTTGCTCCGGTTCTGAAATGAAAGAATTCGAGCCTTGGTCTCAAAGTCAGCCATATGATTCTTCAAAACTAAAGGCTGCACTTGAGGTTTTGAAGTCACTGTGTGAGCCGCAGTGTGATACATCAAAAAGTACTTCTGGGCATAGCACTTTCAGGGAAGATAACAACTGCCTTGGGAACCCTTCCAAAGCTGAAGATTGGAAATTTTTCAAAGATTCTCCTGAGAGTCAAAATTTGTCTGATGAGAATATAAGTTCTATTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGTTAGATTTGCTTGAAGAGTGTCTTAAGAATTCTTTGATTAATTATAGAAGGCTTGATGGGACAATGTCAGTCGTTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTTCCTGAGGTGTCAGTTATAATCATGTCTTTGAAAGCTGCCAGTCTTGGTCTAAACCTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAACCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACGGTCGAAGATCGTATTCTAGCTCTGCAGCAAAAAAAGAGACTGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGAACGACAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGATTAGACGTAAATACTGCATATATGATCTACATTTTTTGGATTGGTGATTTTTTACCTGGGGGCAGGTGTCATCTTGGGTTTCTTTCTGGTGACTGCTGAAGAAACAGAAACAGAACATTTCCTAACAAAAGGATTGGAAGTAGTAACAAGGTCGCTATGAAATGTTCATATGTTCAGAATGAGGCGTGTTATTCTTTGGCCTAAAGTTTTTGTTTAGGATGTATAGACCAGTAGCATATATAGCAACATAGGAAAAAATTATGGATTGTTCTTTTCACTGTGAATAATATAGAATTTTTTGCTTTACCACTTTGCTCCTCTATGGCTGCATTTTGTGTCCACCTTTTAAGTGCATTAATCGATATCATTGTCATGGGTATTACCAGATTGGAGATGAAGTAGCTTTGGAAT 4440 0.3998 MLGRGARLLNVHRSDEKLNLRRSRHRLSGSYGADVMADDDVDFSKLFSANGDGDDDMFYIDIQTVQKVLDEDDNYDFQELNIPEDSSSKTVSPGESGIDDTFRIQNGPQVLEESHFSRLGFADSISCSSCSDVSDSGVRGSVGVSDISANSGLDCERENLGHQSQAGSSPNDFPCNFSCSFSPCESDEVFCTDRTRVSKHEIPAYGVETKASLSSIVDNDCYVEDIIGGGFGQHENDTCAYFEASSMDADRSLHVATSTDFTIGQGSHVSSDDYHVSSDYYHGTHDDGPFVARSALGFLPNNIYSQLRPNEEMMNNNMKAENVELNADIACMSDGMPSSTSGWRSFQDSQIMLDNGYSLFHSGKVIFEDMPSLSLSACTSYMSYGDHYQNNFCQEDAEFNVGQEVKQTPGLFSSVGCQASQCFENEDNYAVISGISNQFQDSIGGTSFQETMGNLNLKAADISWPCAQALITSEKPFGCVERGGTQCKLLDSCFSKGRTENFHVEEDPDVCIIEDISHPAPMSQSANIGNSFNVYHSSRYVDSQSYMTGSTNLKACDERNILRVVLQDLSQPRSEVSPPEGLLAVPLLRHQRIALSWMVQKEASSSYCSGGILADDQGLGKTVSTIALILKERSPLLNGCTNTLKSELETLNLDVDDDMLPQNARVKEESNICEDKSSRYPIKSMNLLKQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQANLSVLVYHGSKRTKDPYEVAKYDVVLTTYSIVSMEVPKQAPADKDDEEKEISEDHAVPSRKRKNPSSSSKNGKKKLDGTILEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFYTGIKNPISRNPTNGYSKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERNFYSKLEADSRAQFQEYADAGTLKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQIFLLKCLGASLALCSICNDPPEDAVVSICGHVFCNQCICEHLTGDDNQCPAADCKSQLSTSMVFSKATLKNCLSDQGSDNSPSCSGSEMKEFEPWSQSQPYDSSKLKAALEVLKSLCEPQCDTSKSTSGHSTFREDNNCLGNPSKAEDWKFFKDSPESQNLSDENISSIDSVTVVGEKAIVFSQWTRMLDLLEECLKNSLINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRLMVASAFGEDGTGERQSRLTVDDLKYLFMM 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03736 1342 ProSitePatterns Zinc finger RING-type signature. 1040 1049 IPR017907 -
Pste3g03736 1342 Gene3D - 557 647 IPR038718 -
Pste3g03736 1342 CDD DEXDc_SHPRH-like 587 909 - -
Pste3g03736 1342 MobiDBLite consensus disorder prediction 762 784 - -
Pste3g03736 1342 Pfam Helicase conserved C-terminal domain 1184 1284 IPR001650 -
Pste3g03736 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1178 1337 IPR001650 -
Pste3g03736 1342 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 792 921 - -
Pste3g03736 1342 Pfam Zinc finger, C3HC4 type (RING finger) 1025 1061 IPR018957 GO:0046872
Pste3g03736 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 871 IPR014001 -
Pste3g03736 1342 SMART helicmild6 1201 1284 IPR001650 -
Pste3g03736 1342 SMART ring_2 1025 1063 IPR001841 -
Pste3g03736 1342 MobiDBLite consensus disorder prediction 760 797 - -
Pste3g03736 1342 Pfam SNF2-related domain 601 986 IPR000330 GO:0005524|GO:0140658
Pste3g03736 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 917 1341 IPR027417 -
Pste3g03736 1342 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 546 1341 - -
Pste3g03736 1342 CDD SF2_C_SNF 1187 1294 - -
Pste3g03736 1342 SMART ultradead3 583 886 IPR014001 -
Pste3g03736 1342 ProSiteProfiles Zinc finger RING-type profile. 1025 1061 IPR001841 -
Pste3g03736 1342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1019 1076 IPR013083 -
Pste3g03736 1342 MobiDBLite consensus disorder prediction 1085 1111 - -
Pste3g03736 1342 SUPERFAMILY RING/U-box 1022 1084 - -
Pste3g03736 1342 Gene3D - 924 1342 IPR027417 -
Pste3g03736 1342 Gene3D - 681 780 IPR038718 -
Pste3g03736 1342 Gene3D - 796 910 IPR038718 -
Pste3g03736 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 909 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03736 Pste-Chr3 29535947 29544700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03736 510 1341 RAD5 or RAD16-like Gene Family AT1G61140 60.000 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste3g03736 SNF2_N 1.1e-69 CL0023