Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03718 GCATACACAACACACACATTGATCTCACTCTTTCTCTCTTTCCCTGTTTCATCCAAAGCCTCGAGTAATCCAAACTCCCGTATCAACTCGCCGCTACTTTTTCCCAAATATCACGAAAACGAAAAGGAGCAAATCAACATAGGAAGGAGAAAATATAAAGCAACGAAAGGCTCAGAAGTTTGTACTAAAATGATGCATGAGACATAGAAAACTGAGCACAAAATCTGGATAATGGACAGCACAGATTCATCATCAGGGTCTCAGCACCCACACCTTCCTCCAGGGTTTCGCTTCCACCCCACAGATGAAGAGCTTGTCGTTCACTATCTCAAGAGAAAAGCTGCTTCTGCACCCCTTCCCGTATCCATCATCGCTGATATTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACGTTTGGGGAACAGGAATGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCCAATAGGGCTGCTACTTCTGGGTATTGGAAGGCCACTGGAACTGACAAGCCTATACTAACAGCTGATGGGCACCTAAAAGTTGGAGTTAAAAAAGCCCTTGTTTTTTATGGTGGAAAGCCTCCAAAGGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTCTTGATAATTCCTTTAATTCAAGCTCAAAACCCCCTTCTCAGCTTGCACATGATCCTCCAAACAAGAAAAATTCCCTGAGGAAAAGCAACAATACAACCTTGCCAAGGCCACCCTTGATGGAGCATGATGAAGAGCTTTCAATGGAGAACATGCTTCCAACAATGTCAACTTTGTCAATGACAACCAATAATAACACACAAAATTCTAAGCCTCCATCTTCGAGGAGCACGAGTTATGGACCACTAGGACTTGAAAATGAAGACAACTTTTTTGATGGAATCTTGGCTGTTGATCAAAGCATGCAAAGTGGTTCTGATCCTAATCTATTCTCTCTAAACACAAAGGGTAATAATAATACTAGCAACTTCCCTCTCAAACGAGCCCTCACATCACAACAACTTTGGAATGAGACAGGGTCTCCTGGGTCATCTTCTTCATGCAAACGATTTCATGGTGATCTTAACAATGGAAGCAACACTGTTGAGGACAGTGATTCGTTTGTTTCTCTCCTTACTCAGTTTCCTCAGAATGCAACGCTTAACCCAAACGTTGGGGATGGTGCACCGAGACAACAATTTCAACTTCATGGGTTAAATTGGAACTGA 1263 0.4315 MDSTDSSSGSQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVSIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTADGHLKVGVKKALVFYGGKPPKGVKTNWIMHEYRLLDNSFNSSSKPPSQLAHDPPNKKNSLRKSNNTTLPRPPLMEHDEELSMENMLPTMSTLSMTTNNNTQNSKPPSSRSTSYGPLGLENEDNFFDGILAVDQSMQSGSDPNLFSLNTKGNNNTSNFPLKRALTSQQLWNETGSPGSSSSCKRFHGDLNNGSNTVEDSDSFVSLLTQFPQNATLNPNVGDGAPRQQFQLHGLNWN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03718 343 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Pste3g03718 343 MobiDBLite consensus disorder prediction 1 21 - -
Pste3g03718 343 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Pste3g03718 343 MobiDBLite consensus disorder prediction 278 299 - -
Pste3g03718 343 PANTHER NAC TRANSCRIPTION FACTOR 56 15 170 - -
Pste3g03718 343 MobiDBLite consensus disorder prediction 147 181 - -
Pste3g03718 343 FunFam NAC transcription factor 56 24 178 - -
Pste3g03718 343 MobiDBLite consensus disorder prediction 147 178 - -
Pste3g03718 343 MobiDBLite consensus disorder prediction 199 225 - -
Pste3g03718 343 Gene3D NAC domain 24 175 IPR036093 GO:0003677|GO:0006355
Pste3g03718 343 SUPERFAMILY NAC domain 10 149 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03718 Pste-Chr3 29383778 29385925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03718 5 343 NAC Transcription Factor Family AT1G61110 50.824 1.89e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g03718 NAM 5.1e-39 No_clan