Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03680 CTTCCACAAAGACGTGTTAAGCATTGCTGACGTCTTTTTTCAATTATAGATAATATCTTGTTTTGTTCAGTAAAAAATCGAAATTCTGAAGCAAAAGAAACGGCAGACACTGTGAGCTTGGAATCGTTCGTGCAGTGGATTGGGAAACCTTGTCGCTACCAATCTATGCCTGATCGCATTCTACTTTGGTGATTTAGATGGATGCTACTTCTCTGGGTTCAAATACCAATACTCAAACCGACCAACATCCTTTGTTGATGGAGCAGCCCGAAACCCTTAATGGTCATCGGCATATAATTGACATTCCAAGGAATGGCGAAGCTATAACCACGTCCTCTCATAATGATCAACACTCTGAAATGCATTTACCACAGCATCAAGATCAAATGCCTGCAGAAACACATCAAACATCTTCCTCTTCTGCATCCAGATTAAACTCAGCTTCATTGAGAAGAGGTGAGGGGTATGGTCATCGTGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTGTCGTTGTTTTGTCATTGTCCAGGAATGAGAATCCCCAAGCCCCATTATTTGCATGGATTGTTGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATCCTCTACTGGCGTTTCCGAAACCGTAATCAAAGCAATGAACAAGATATCTCCCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACTTATACTGCCATCTACATTTCACATGTCTCAGACGAAGAGAATGGTCATGCTACACAATCGGTCACAAGAAACACAATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGATCATTTCAAGATGGCCTTGGATTGTTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATAGGATATGCTATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCCCAAAATAGAGGAGCAACAATAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAAGTGAAGAACAATGAAAATTGTGATGATCATGATGTCAATGCAGCTATAGATGAAAGTGGAATTCTGGCTGCAGGGACAGAAAAAGAGCGAGTGATTTCTGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGTAGATGATGACGAGCTTAGAGAGTTGCCTTGCTCTCACGTTTTTCACGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCTTCCTGCCCTCTTTGTAAAAGTGAAGTTGGTACGAGTAATGGAGGGTCACCTTCAGCCTGGGACTCTCATTAGGTGAGAATGTATGCCATCGCAGCCGAAGTTTATCTCTGCCAAGAAGTTGCAGCAGCTTTTCTAGTGTACATAATCAAACTTTTGGATTCTGTTTGAAGTTGAGATCCAAAAATAGATGCAAATCGAGTAATATCTTGAGCAAATATGATGTTTACTTGCTAGTGAACGGTTGACAATGTGTTTTTACATACTCCACAAGTATTGTTTGTAGAAAGTAGGATGTTTCAAATTTTTCTTTGTTTATCAGTTCTCCATTTGTATATATAACAAATTTAGTGAAAATGTCGTTTTTTTAATTTAAAACTGTAAAATGATCTGATGTTCTTAAATACTGTTTTGATTATCTTGATGATTATGTCAATTCCTTGC 1808 0.3888 MDATSLGSNTNTQTDQHPLLMEQPETLNGHRHIIDIPRNGEAITTSSHNDQHSEMHLPQHQDQMPAETHQTSSSSASRLNSASLRRGEGYGHRGRSPLNSGLWISVELVVTVSQIIASVVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDISQGSSGSNPPDRTYTAIYISHVSDEENGHATQSVTRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATIESINALPIFKFKVKNNENCDDHDVNAAIDESGILAAGTEKERVISGEDAVCCICLAKYVDDDELRELPCSHVFHVVCVDKWLKINASCPLCKSEVGTSNGGSPSAWDSH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03680 413 SUPERFAMILY RING/U-box 346 402 - -
Pste3g03680 413 ProSiteProfiles Zinc finger RING-type profile. 355 396 IPR001841 -
Pste3g03680 413 Pfam Ring finger domain 355 396 IPR001841 -
Pste3g03680 413 SMART ring_2 355 395 IPR001841 -
Pste3g03680 413 MobiDBLite consensus disorder prediction 63 82 - -
Pste3g03680 413 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 399 - -
Pste3g03680 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 404 IPR013083 -
Pste3g03680 413 MobiDBLite consensus disorder prediction 42 93 - -
Pste3g03680 413 FunFam E3 ubiquitin-protein ligase 338 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03680 Pste-Chr3 29064383 29073671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03680 1 406 C3H Transcription Factor Family AT1G80400 56.731 2.36e-166 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03680 3 29064383 29073671 Pste3g03680 3 29064383 29073671 ECH