Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03629 CAACAAAGGGAGCAAACACAAACACAAACACACTCTCTCCTTGGGCCTGAAAAACAGAAAAACCCTTGTTCCCTTCCTCTGCAGAGAAACACGAAACACGGGTTCTCTGCAAAAAAAATAAAAATAAAAAATTCCCAATTCTCTCTCAAAATAAAAAAAAAAAATCAATGGCGAAGGAGGAGGAGCCTTTGCCGGAGCATCTCCGGTGCGGGCGCACTGACGGCCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGATAATCTCAAGCTCTGCGAGATTCACTACCTCCAAGGTCGGCATCGGCAGTACAAGGAGAAGGTTCCGGAGTCGTTGAAGCTTCAGCGGCAGCGGCAGCGCAAGCGCAAGAAGAGTAACGAGGGGGGAGAGGAACCAGAGACAGAGCCTAAAACTAATGATAATAGTGTTCTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCAGAGGCTTTCGGATGAGGCCGATGCGTTGGTGGTGGCGGGTTCTTCTCCGGCGAGGAAGAAGCCGGTGAAGCAGGGGGATATGCAGCTGGAACTCATAAGGATGGTTCTTAAGAGAGAGGCTGAGAAGAAGAACAAGAACAGCAAGAGTAAGAAGCATAAGAAGAAAAATAAGAAGAAGGAGAATAAGAAGAAAAAGGAGGGGGAAGAGGAATTGGGTTTCGCTGAAGGAGAGTTGAGGAGGGAATTGCCGAACGGTGTGATGGAAATCTCTCCGGCTTCGCCTACTCGTGATTACAACAATGTGGGTTCGCATTGTGATGTGAAAGTGGGTGTTGATACCAGAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCCGGCAAGTTGCAGGTTGTGCCATATGAATCGAACTTGAAGAAGGGTGCGGGTTCGGGTAAGAGAAAGAAGTGTCATTTGTGCCACAGAAGTGAGGCTGGGAATCTCATCCAGTGTTCAAGATGTCAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATCTTGACACTCAAAATGAAGTTAAGAAGGTGTGCCCAGTTTGTCGTGGAACTTGCAATTGTAAGGATTGTTCAACAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTCACCGGTAAGAGTAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGTATGCTCCTTCCAGTACTAAAGCAAATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCCGATATTCAAATCAAGCAAGTTGAATTTGGTTGCAACGAGAGAAATTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCCAGTTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAACTTCTTGGGAAATTAACTCATCTATGTTCAAGCGACCTGATAAAATGAAAGCTTGCAGTGTTAGTGAGAGCCATACTGTGGATGAGAAAGCCTTATCTAGTGGCAATTTGAATGATACTTCAATATTGTCTGAGTGGACAAATTGTAATGGTATTTATAGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAATAACCACCTTGAGTTGAGATCTGTTTTCCCCTCCAGTTGGATTCAAGAGATGGAAGCTAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGACAAAAGTTCGAGCTGCTCATTGTGTTTTGACACCGATCACAGTACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGTTGGACATCAGCGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCGAGATGTGCTCCAAAGTACATCATATCTCAGTTGGGATCCGTTGATCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAGGAATAAAGGCTTGCTTGAATCTTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTCAAACGTCATCCTCAGAGAAACACATGGCATGAGATGCTCAAATTGAAGGGGTGGCTTTCTTCACAAATATTCAAAGAGCAATTTCCAGCTCATTTTGCTGAGGTAGTTGATGCTCTACCAGTTCAAGAATACATGCATCCCTTGTCCGGTCTTCTGAATTTAGCTGCAAATTTGCCACATGGGACTGGAAAACATGACATTGGGCCATATGTCTATATTTCTTACGGCTCTGCTGACAAAGAAACTGATTCTGTGACAAAGCTCTGTTATGACTCGTATGATGTGGTTAATATTATGACACATGCTGCAGATGTTCCCCTCTCTACAGAACAACTTACAAAAATTAGAAAATTACTGAAAAAGTACAAAACTCTCTGTCAGATGGAGACTATTGCTACTGAGGAACCACAGGAACAGAAAATGAATGGAATGGCATTATTGCATGTTGAAGAAACAGAGAGAAAACAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGTATCTTAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGATTGCAATATTTCACAGAATCGAGAATGTGATTTTTCTGATACTGGACCCACTTTACTTCTCCTTGGAACTGTTCAAACTAGTGAATTGCCTAAACATGATAATCCCAGAAATCCATTTGAAAGCTCACAAAGACATAAAAATAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTATTTCGTAGACAAGATGTACCAAAGCTTCTAGAATACCTTAAAAGACACTACGACAAATTTTCTTTCACCCATGACTATCACAAGAAGATGGTTCATCCTATTCTAGATCAGAGCATTTTTCTTGATAGTACTCACAAAATGAGACTAAAAGAGGAATTTAAGATTGAACCATGGACTTTTCATCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAAATCAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAGAATGTTAGCGAGGGTATCCAGTTGATTGATGAGGTCCGACTATTGCCTGAAAACCATAAAGCGAAAGCTGACGTGTTGGAGGTAAAGAAAATGGCACTTCATAGCATGAATACAGCAATTAAAGAAGTACGCCAGCTTACAAGCAGAACATGATTGCACCAGCTAAAATATACTTACATGCCTCTCAGGCTCTTGAGATCTTATGTCTCAACCTTACTTCCATATCTTAATTCTTGTATAGATTAATGCTCGGACACATTAATATCTAGTAAGGAACTTGTTAAATTGATCAATTTCCGTCTCTATCTATTTTTTCTTCTGTGAAGTTCATGCATGACCTGAAATGAAATAAAATTTCATGGCTTGTATATATTTCATCAGTTTTATTGAAACAAAA 3528 0.4113 MAKEEEPLPEHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLQRQRQRKRKKSNEGGEEPETEPKTNDNSVLDNVESRARRTSRIVKKKQRLSDEADALVVAGSSPARKKPVKQGDMQLELIRMVLKREAEKKNKNSKSKKHKKKNKKKENKKKKEGEEELGFAEGELRRELPNGVMEISPASPTRDYNNVGSHCDVKVGVDTRTVTPRYFRSKNVDRVPAGKLQVVPYESNLKKGAGSGKRKKCHLCHRSEAGNLIQCSRCQREFFCMDCIKERYLDTQNEVKKVCPVCRGTCNCKDCSTSQCKDSESKEYFTGKSRVDRILHFHYLICMLLPVLKQISEDQNIELETEAKIKGKNISDIQIKQVEFGCNERNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKTSWEINSSMFKRPDKMKACSVSESHTVDEKALSSGNLNDTSILSEWTNCNGIYSLSCPPTELGGCGNNHLELRSVFPSSWIQEMEAKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLQEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPIVVRDVLQSTSYLSWDPLIMFCTYLEQSITRYERNKGLLESCLDWWEVEINIRQYFTGSVKRHPQRNTWHEMLKLKGWLSSQIFKEQFPAHFAEVVDALPVQEYMHPLSGLLNLAANLPHGTGKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHAADVPLSTEQLTKIRKLLKKYKTLCQMETIATEEPQEQKMNGMALLHVEETERKQSMVEEGMNFFRRVNRTSCILTEAKKVSSQSMDCNISQNRECDFSDTGPTLLLLGTVQTSELPKHDNPRNPFESSQRHKNKFTEHLGAQWDVFRRQDVPKLLEYLKRHYDKFSFTHDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFHQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVSEGIQLIDEVRLLPENHKAKADVLEVKKMALHSMNTAIKEVRQLTSRT 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03629 1038 MobiDBLite consensus disorder prediction 43 58 - -
Pste3g03629 1038 ProSiteProfiles Zinc finger RING-type profile. 260 306 IPR001841 -
Pste3g03629 1038 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Pste3g03629 1038 MobiDBLite consensus disorder prediction 43 109 - -
Pste3g03629 1038 MobiDBLite consensus disorder prediction 143 180 - -
Pste3g03629 1038 Pfam JmjC domain, hydroxylase 887 979 IPR003347 -
Pste3g03629 1038 SUPERFAMILY Clavaminate synthase-like 573 1024 - -
Pste3g03629 1038 SMART cupin_9 674 1001 IPR003347 -
Pste3g03629 1038 MobiDBLite consensus disorder prediction 149 166 - -
Pste3g03629 1038 Pfam WRC 9 50 IPR014977 -
Pste3g03629 1038 Gene3D Cupin 565 1010 - -
Pste3g03629 1038 MobiDBLite consensus disorder prediction 66 81 - -
Pste3g03629 1038 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1036 IPR045109 GO:0032454|GO:0033169
Pste3g03629 1038 ProSiteProfiles JmjC domain profile. 693 1001 IPR003347 -
Pste3g03629 1038 Coils Coil 142 182 - -
Pste3g03629 1038 FunFam Uncharacterized protein 562 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03629 Pste-Chr3 28564482 28571300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03629 9 48 GRF Transcription Factor Family AT2G22840 52.500 4.79e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste3g03629 JmjC 1.2e-08 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03629 3 28564482 28571300 Pste2g01872 2 19112158 19117885 PCT