Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03626 TAGAGAAAGAGCAGAGAAGGGTGTTAGGTGCATGAACAAAAACAGATGGTAGACTTGCTGTGAGTATCAGGCTTGCATGCATAGTCTGTGTTTGTTGGTTCCAATTCATTAACAATTTACTTGTGAAGCATATGTGATGTGAAGAGATTGAGAAGGTGTGAATGGAGGAGAAAGCATGTTGTTGTGAGTGTGAGTGTGAGTGTGAGTGTGAGTGTGAGGAGGGAAAGGCCTTGTCACTGAACTTGAAGGAGACAGAACTGAGGCTAGGCCTCCCTGGAAGTGAATCTCCAGAGAGAAAAACAGGTCATGCGGTGTGTCTTTTTGGGAAGGAGTTGCAGAAGAAGAAGGGTGGAGCTAAGAGGGGCTTCTCCCATGGATCTGCTTTGTTCTCTCCTACAGCTTTAGACACTCAAACTAACACCGCCATCAAACACCAATCTGCCAAACCGCTTCAGGAAAACAATCATCACCCTTCAGCAACAAATCCCCATGCAACTGCTCCTGCTTCCAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCATTCCGAAAGAACACGATGTCCTCTAATTTGACAAAGAACAATGATGAAGCTGAAGGAAAATTAGGATTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACTTATAACAACTATATGGAACTTTCCTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTACTACCTCTTCCTTCTTCAAAATTTGTCAATGCAATTCTCCTGGAATTCCAGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTGCATAGATCTGAATATGTTCTTACCTATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGAAGACTAAGGATAACTAAAGGCTCTGAGGCAATTGGGCTAGGTACGTACCTCCAAGGGCCAGGGAAAAATCTAGGAGCCAAAACTGATAATGCAGAAAAACCTGTTAGACAAAAGCAGGGTATTCACTGAGAAGTATATATATATATATTATAAAGATTTACAAGGGCGTGTCATATATGATTCTATTAAAAATAAAAAACATATCTTGTTCAGTGTCTCACCTTTTGTGTATTAACAGTCTGACAAGTTTTTATCAGTAGAATTCAACGGGAGACATCCAAACAAATATATACACATATTTTGTTTGTTTTTCTATTTTGTGTATCCTTAATTGGATTCTAGTTGTTGTATAAAAGAATTGCTTGA 1298 0.4052 MEEKACCCECECECECECEEGKALSLNLKETELRLGLPGSESPERKTGHAVCLFGKELQKKKGGAKRGFSHGSALFSPTALDTQTNTAIKHQSAKPLQENNHHPSATNPHATAPASKAQVVGWPPIRSFRKNTMSSNLTKNNDEAEGKLGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGTTSSFFKICQCNSPGIPGKDGLSESSLRDLLHRSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRITKGSEAIGLGTYLQGPGKNLGAKTDNAEKPVRQKQGIH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03626 299 MobiDBLite consensus disorder prediction 88 117 - -
Pste3g03626 299 SUPERFAMILY CAD & PB1 domains 153 262 - -
Pste3g03626 299 Gene3D - 150 275 - -
Pste3g03626 299 ProSiteProfiles PB1 domain profile. 153 264 IPR000270 GO:0005515
Pste3g03626 299 MobiDBLite consensus disorder prediction 280 299 - -
Pste3g03626 299 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 269 IPR003311 GO:0005634|GO:0006355
Pste3g03626 299 Pfam AUX/IAA family 30 271 IPR033389 -
Pste3g03626 299 MobiDBLite consensus disorder prediction 88 114 - -
Pste3g03626 299 FunFam Auxin-responsive protein 149 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03626 Pste-Chr3 28534141 28536863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03626 135 278 B3 DNA Binding Superfamily AT5G37020 27.778 6.71e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste3g03626 AUX_IAA 8.5e-83 CL0072