Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03604 ATGGCGACAAACCTCCCCGACCACTTTAAGTGTCCAATTTCCCTAGAAATAATGTCCGACCCCGTCATCCTCTCCTCGGGTCACACCTTCGACCGTTCCTCTATCCAACGTTGGCTCGACGCAGGTCACAGAACATGTCCAATTACCAAACTGCCCCTCCCGGAACATCCTCTCCTCATTCCCAACCACGCGCTCAGAAGCTTAATCTCCAACTACACGCTCCTCCCTCCTCTCCACCAAACCATTTCCCAACCCCAAACCCTAATTTCAACCCTCACCTCTCATTCTTCCTCACTCGAATCAAAAATTGATTCACTCCGCCACCTCACGCGACTCTCCAAGCGAGATACTGCCTTCCGCCGCTTCCTTGCCGACTCCGGCGCCGTCCCCGCCGTCCTCGCCGCCGTCGAAGACCCGCTCCTGCAGGAGAAGGCCCTCCCGCTGCTCCTCAACCTCACCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAGGGCCTCCTTGCGCACGTCGTCGCCGTCCTCCTCCACGCGCCTCCCGACTCCCGCGCCGTCGCCGCCACCATCGTCACCAGCCTCGCCGTCGTCGAGGTTAACAAGGCCACCATCGGCGCCTTCCCGGCGGCGATCGCGGCGCTCGTCGCGATCCTCCGCGACGGCAAGGGACGGGAGAGGAAGGAGGCCGCCACCGCGCTCTACGCGCTATGCTCTTTTCCGGATAACCGGAGAAGAGCTGTCAATTGCGGCGCGGTGCCGATTCTGCTCAGAAACGTTGAAATTGGACTCGAACGCTGCGTTGAGGTGATTGGACTTTTGGCCAAGTGTAAGGAAGGGAAAGAAGAAATGGAAGGTTATAAAAATTGTGTTCAGATTCTGGCTCGCGTTTTGAGGAACGGAAGCTCAAGGGGGATTCAGTATGCGCTTTTTGCACTCACTTCGCTTTGTTCTTATAGTCTTCCTATGCTTCTGCTAGCTCTGGAAGAAGGGGTTCTCGAATCTTCTCTTGCCTTTGTGGAAGACGATAATGAGAAAGTGAGAAGGAATGCCTGTAGTTTGATTCGGGTTCTGCGTGCTAACAGCACCAGCCACGATAGGTGA 1098 0.5683 MATNLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHPLLIPNHALRSLISNYTLLPPLHQTISQPQTLISTLTSHSSSLESKIDSLRHLTRLSKRDTAFRRFLADSGAVPAVLAAVEDPLLQEKALPLLLNLTLDDDSKVGLVAEGLLAHVVAVLLHAPPDSRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLRNVEIGLERCVEVIGLLAKCKEGKEEMEGYKNCVQILARVLRNGSSRGIQYALFALTSLCSYSLPMLLLALEEGVLESSLAFVEDDNEKVRRNACSLIRVLRANSTSHDR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03604 365 Gene3D - 80 206 IPR011989 -
Pste3g03604 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Pste3g03604 365 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Pste3g03604 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Pste3g03604 365 FunFam RING-type E3 ubiquitin transferase 69 260 - -
Pste3g03604 365 PANTHER U BOX DOMAIN-CONTAINING 5 356 - -
Pste3g03604 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Pste3g03604 365 SUPERFAMILY RING/U-box 3 73 - -
Pste3g03604 365 SUPERFAMILY ARM repeat 75 356 IPR016024 -
Pste3g03604 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Pste3g03604 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Pste3g03604 365 Gene3D - 207 365 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03604 Pste-Chr3 28331348 28332445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03604 1 356 U-box Gene Family AT4G21350 58.311 2.18e-139 399