Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03602 GTGCTATAAGGGTATAGGGTAGGGGGGGAGAGTGTGTGAAAGGCAGGATGAGTATCTTTATCGGAGGTCAGCACTCAGCCCAAGCATAAGCATAGCTTGCTTTACTTCCTGTACTAAACAACCTAACGTTATTTTTATGAGACTTGAGGTTGCGTGCATTGTGCTCTAATTCCGTTCCTGTTTTGTGTTCTTGGGTTCGTTGGCCAAGGGGAATCTCTCTGGTTTTTATCATCCTCTCTATCTCTCTTCTTTTCTTTTTTTTTTGCCTCTTCTCACATAACCTTCCCTCTCTCCTTAAAAAAGGGAAATACATAGAGATAGAAAGAGAAAGAGAGCAGGAGAACCCACTAAGCGTGCAAATAAAAGACTTAAAGCAAAGCTAGATTACAATCCCATGCTATTATAGCTCCCTCCACCTTTGCTTTTCCTTTCTCTCTGTGGGGTTTCCCTTGAGCTGTGATAATATTTGTGTTCCTCCTTCTGCTACCTTAACCTATCCAACGTTTTGCAGTGCCCAAATTCTTTTAAGTTAAGGTTTCCTTGTAGGTCCTTCTGCCTCTTAGCCATAGTTGCTCACGTATCACAAGTTTCTTATCCAGAAGCTGTTCTTTTTCTTTCACAACTACAAGATGTGGTATTTAGCGGATTTGAGCTCTGGTTAGAAGTTGTGGTTCAATATTATTATTTATTGCACATAAATAGTTGAGCAAGGAGGAATCTTCCTTTTGGGTGTGGTGTGAACTAAAAGATGGATGAAAGGTCAAGGAACGACGAATCTCCTCAGCTGTTAGATTTGATCCCGAACGAGAGAGAGTGGCAGATGAACAGAACCGAAGGGAAGTCTTCAGAGGAGCGAAAGCTTGAACTGAGGCTAGGCCCACCTGGTGAGGACTGGTCTCTCACAGGTAAAACGAAGACTGAAATAGAAAAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCCAACATGTCTCATGCAGTACTCAGCCCCAACAATGGATTTCAAAGTAAGGCCTCTCCATGGCCAAACTATCACCAGGGTAACACCAAAACCTCTTCATCGTTTATTCAGTTCCCATCAACTCCATCAGTGATGGGAAAAGATGCATCACAAGTTTGTTGCCCTAAGGTGGTGGAGTTGCAGAATGGTGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGACGTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTGGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGTGCTTCTAAGCCACCTCTTGAGTCACAGCCTGAGCAGCATAATAAGGTTGCTGGTAAGAAATCTGTTGACAACTATGGTAATAAAGGTTTGTTCGTCAAGATCAATATGGATGGCGTTCCAATAGGGAGAAAAGTAGACCTCAACGCCTACAACAGCTATGAGAATCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGCCTTCTTGCGGCCCAAAGAGATTCTTCTCCTGGTGGAGTTCGCAACAAGCAGGAGGAGGAGAAAGCGATTACAGGCTTATTGGATGGGAGTGGAGAGTATACTCTTGTGTATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTTAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACTCTTGGCAGTAAGCAAGACAAGACATCACTTGACTCTGCTATGAGATGAACAGCAGTTTGAGGTTTTGTTTCCCTGCTGAAACTTGAAGACTCTTCTAATTTGACGTTTTGGTTCTTGTATGATGAAGATGGGATGAAGCTAGTTGCGCGTACATTACAACTAAGTAATGTGATGGATGTATCTTTTTCTTTCCTTTTTAATGAAGATTTGAAATGTTTATGGGTTGTATAAATAGGGAAGGGAAACTTCACGGATGTGTGTACTTATGATTTACTGTTGAGTAACCATTTAACTTGTTTTGGTTTGAATTTTAATTTTTGAAGAAAAGAGTCAAATTGGGGGTTGTAAAAATTCGGCTTACCTACTGGAATATTTCTCCCAA 2090 0.4273 MDERSRNDESPQLLDLIPNEREWQMNRTEGKSSEERKLELRLGPPGEDWSLTGKTKTEIEKSLLSLGCFSPNMSHAVLSPNNGFQSKASPWPNYHQGNTKTSSSFIQFPSTPSVMGKDASQVCCPKVVELQNGGDSKVFSPSSANTAVSQPNTSQKRRAPAPVVGWPPIGSFRKNLASSSASKPPLESQPEQHNKVAGKKSVDNYGNKGLFVKINMDGVPIGRKVDLNAYNSYENLSSAVDELFRGLLAAQRDSSPGGVRNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKTSLDSAMR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03602 335 MobiDBLite consensus disorder prediction 135 157 - -
Pste3g03602 335 MobiDBLite consensus disorder prediction 1 52 - -
Pste3g03602 335 MobiDBLite consensus disorder prediction 135 200 - -
Pste3g03602 335 Pfam AUX/IAA family 38 318 IPR033389 -
Pste3g03602 335 Gene3D - 204 325 - -
Pste3g03602 335 MobiDBLite consensus disorder prediction 22 43 - -
Pste3g03602 335 SUPERFAMILY CAD & PB1 domains 201 310 - -
Pste3g03602 335 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 316 IPR003311 GO:0005634|GO:0006355
Pste3g03602 335 MobiDBLite consensus disorder prediction 173 189 - -
Pste3g03602 335 FunFam Auxin-responsive protein 204 325 - -
Pste3g03602 335 ProSiteProfiles PB1 domain profile. 209 313 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03602 Pste-Chr3 28302815 28306618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03602 213 324 B3 DNA Binding Superfamily AT4G23980 33.929 5.18e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste3g03602 AUX_IAA 5.6e-70 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00824 6 3186809 3190292 Pste3g03602 3 28302815 28306618 ECH
Pste3g03602 3 28302815 28306618 Pste3g03602 3 28302815 28306618 ECH
Pste3g03602 3 28302815 28306618 Pste6g00824 6 3186809 3190292 PCT