Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03587 CTTATACGGCCTTTTGCTCTTCCAATCTATATAAGCCTCCATTCAACAAACACACACTGCATCAGTACTGGTATTCCATGGCATCTGAAGTGTTGTCAAGTAGCTATCTATATATGGATGGTTTACGTTGGGATGCCTCATCACAACTTGTAGCTAACACACCGATCTTGTGGAGCACTCAGCCTCAAGACCTTGAAGGAGGTGATTACTACAACTCCATGCCCCACATAAGTTCAAGTGTTCTCAGTCAAACAGGTTATCTATATCCCAGTTCTGAAAAAGTAAGGGACATGGTTCAGTCATCCTCTTCTGAGATAGTGAGTATGATGTCAAACACAAATCTGCCACAAAGAACATCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGAAGCTTTAACATCCCAATCATTCCCGTCCCTTTCGATGATTATGAACCAAACTAGCAATTACGTAGCAGATTTCAACATGGTCCACCAGCAACAGCGCCTTATCAATGGCACACAAAACGGCAAGGCTACCTGCTCCCTTGAGTCACTTGATTGCTTGCTTTCAGCTACTAATAATAGCAACACAGACACGTCTGTCGAAGATGATGGGATTTCCATGATTTTACATGACTGCAGAAACCTATTAAATTTCAGTTATAGCAGTGCATTTTCCTCTGGTGAATCAGAGAGCAATGCTTCCAATGCTAGAAACAGTGACATGCGGTATCATCCACCAGTCCATGAGCTGGATGAATCAATGTCTCGAAGTTTCTCTGATCAATATCTCAGTCAAGAAAGAGTTATAGATTCTGAAGTTGTTTGCCCGAAAAGGAGTAATTCATGTTTCAGCATTGCTCAGAATTCTTCTGCCACCGAAGGAGGTTTCGGGCTTATCTCGGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATAAGAGTTATCCCGGTTCATCAAACATCAACTTTCAGCAGCCAAATTCATCCGTGACACCTTCCTTTAACGAAGAACCTGATCCAGAAGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCTTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAACGTTAGGATATCAACCGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCCGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTAGGTAACAAGCTTAACACAATGAATTGTCCTCCTACTAACTTAGCCTTCTCTTTCAACCCTTCTTTTCCCACACAAACACATTTCCCCATTCAAAACCCTAGCAGTCACATCCAACATTCCAAGGGT 1430 0.4343 MASEVLSSSYLYMDGLRWDASSQLVANTPILWSTQPQDLEGGDYYNSMPHISSSVLSQTGYLYPSSEKVRDMVQSSSSEIVSMMSNTNLPQRTSTMPVKSGAAGASWEEALTSQSFPSLSMIMNQTSNYVADFNMVHQQQRLINGTQNGKATCSLESLDCLLSATNNSNTDTSVEDDGISMILHDCRNLLNFSYSSAFSSGESESNASNARNSDMRYHPPVHELDESMSRSFSDQYLSQERVIDSEVVCPKRSNSCFSIAQNSSATEGGFGLISETSPKSKRPRWDKSYPGSSNINFQQPNSSVTPSFNEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLNTMNCPPTNLAFSFNPSFPTQTHFPIQNPSSHIQHSKG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03587 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Pste3g03587 451 Coils Coil 389 409 - -
Pste3g03587 451 MobiDBLite consensus disorder prediction 287 309 - -
Pste3g03587 451 SMART finulus 356 405 IPR011598 GO:0046983
Pste3g03587 451 Pfam Helix-loop-helix DNA-binding domain 360 399 IPR011598 GO:0046983
Pste3g03587 451 MobiDBLite consensus disorder prediction 199 213 - -
Pste3g03587 451 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 166 448 IPR045843 GO:0003700|GO:0006355
Pste3g03587 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 416 IPR036638 GO:0046983
Pste3g03587 451 Gene3D - 355 418 IPR036638 GO:0046983
Pste3g03587 451 MobiDBLite consensus disorder prediction 199 220 - -
Pste3g03587 451 MobiDBLite consensus disorder prediction 268 311 - -
Pste3g03587 451 FunFam BHLH transcription factor 353 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03587 Pste-Chr3 28178432 28180474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03587 124 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.301 1.58e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g03587 HLH 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03587 3 28178432 28180474 Pste3g03587 3 28178432 28180474 ECH
Pste3g03587 3 28178432 28180474 Pste6g00885 6 3451899 3453841 PCT