LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g03562	TCTAGACGGCGATTTACAGCGTAGCTGTGCTGTGCACAAAATCTCTCTCACTCTCACCATTCAAAGCATGTCATGTCCCATTTCACTCTCCACACCAAATTGCAACACCACTGCCTTTTATATTAGTAAATTTCAATTGCCAATTTTTGAAATATTTAATACTACCATTCTGTTTCCCCCTTCGCCATGTCTCTATCTCCATTTCTCACTCAAACAAACCTCTTCCCTTCTTCTCCTCACCCAAACCATTTTTTAATGCCTCTTCTCTAAAATCCCATCCATTTCCTTTCACTCCCATCTTCATCTTTTCCTTTCATTCTCTGCCATTCTCATACTACTACCCAAATGCAACATCATATTGCTAAAAAGGTGAAAATTGATACTGAACTTTCAGTGACCCAGAGAGCTAGACGACCTCTCTATCTTTAGTCATATCAATAGTGATTGGAACCCTCCTGATGCGTGAAGGACATGGCACTATTTCTGTAGTGGGATCTTTGGCAGGGGGTGCCTCTGGAGTCTTATCAAAAGTAAAGCCAACTAGTTGAAGCCAATTTTTTTTTTTTACTTGTGGAGGGTGATTTGAAGACTCCATAGCACACTTAGTGTCTGTGACTGTTCTATTGTAACGGATTGTCTCACGGGCCTTCATGTGCAGTGCTTTTAACCTTGTTGAATTTCTGAGACTTGACTTGAGATGCATAGTAGTAACTGGTAAGATTGGGGGATGCAACGTCTTACTTTTTGAGCCAAAAGATATTTGATTCTTCACAGATTTGATTTTATTTTGGTAACGTACTGGTAGAATCCCTCCTGTTGGCGACTGAAAGGCATGGTTTTGATAAAAGTTCACTTGCCATTCTGTAGCACTGTAGGTTTGAGTTCTGGTTAAAAGAGTCTTGTCAGTGGTTGTTCTGTCATTGCTTGGAGACATGTTGCATGTTGGTTATATATATAATAATTCTAGTGGTGCTTGACAAGGTGAGAGAAAACCAGTGATCTTGATCATGGTCTTGCGTTTCTCTTCCTTGTTGTTTAGAATATCGGAACATGTGGGTTTGATGGTTGTTGAGTGATATCTTTTGTGTAAGGCATTTTTTGTGGGATTGTTGGTGCTGATGAGTCGAGAACAGCAGAAGCGAGTGAAGCAAGAAAAAGGTTCTGATGGAGCTGAAAAGGTTATTGTTGCCGTTAAGGCATCAAAGGAAATTTCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTTCAACCTGGTGACTGCATTACACTGCTAGTGGTTGTACCTTCACAAAGTTCAGGCAGAAGATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAGTGGTCATAAAAAGTCTACATCAGGATCATCAAGTTCAGAGCAGAAGAACGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGACCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCCTGTGGAGCAGTGGCTGCAGAAGCCAGGAAAGCCCAAGCCAATTGGGTTGTATTAGACAAACATCTCAGACATGAGGAAAAACAATGCATGGAAGAGCTGCAGTGCAACATTGTGGTCATGAAGCGTTCCCAACCCAAGGTACTTCGCTTGAATTTGGTTGGAGCAAAAAAGAAGGATCTTGAAGAATTATGTCCATTACCATCTGAACGAGATGAGATGCCTGGAAAACAAACTAAGAAGAAGGATGATTCTTTAAATTCATTAAAAGTACCAGTTGTCACTCCAACTAGCAGCCCGGAGCTAGGGACACCATTTACTGCAACTGAAGCTGGTACTTCGTCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTTTTCATCTCTGAAATGAATGGCGAATCAAAGAAAGAGGAAACTATCCAAGAAAATCCAGAACTTGATGATTCTATATCAGACACAGACAGTGAAAATTTGTCCACATCATCAGCAAGCTTGAGATTCCAGCCGTGGATCGCCGATTTACTTTTGCATCAAAGATCATCTCAACCTAAGGAAGAAAGAACAGAGAGGTCTCAGAATAGGCCTCAATCGGTTACCACTAGAGCTTTGCTAGAAAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTTTGATTTCAATGGTAATGTTAGAGAAGCAATAGCGCTATCTAGAAATACCCCACTTGGTCCACCTCCCTTGTGTTCAATCTGTCAACACAAAGCTCCTATTTTTGGAAAACCTCCTAGATGGTTCAGCTATGCTGAATTGGAGTTTGCCACTGGCAGATTTTCACGAGCGAATTTCTTGGCAGAAGGAGGATTTGGATCTGTCCATAGAGGGCTTTTACCAGATGGACAAGTTATTGCTGTAAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTTGAATTCTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGCTTCTGTATAGAGGATAAAAGAAGGCTATTGGTCTATGAGTACATTTGTAATGGGTCATTGGATTCTCATTTATATGGGAGACAGCGAGAACCATTAGAATGGTCTGCCCGACAAAAAATTGCAGTCGGAGCTGCTCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTAGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATTCTTATAACTCATGATTTTGAACCACTGTTCATTAAAACAATTGTGTTGAATTCTTCAAAGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTAATTGGAACATTCGGGTATCTGGCTCCAGAATATGCTCAAAGCGGCCAAATAACTGAAAAGGCTGATGTTTATTCTTTTGGTGTGGTATTGGTGGAACTTGTTACAGGACGTAAGGCAGTGGATCTCAATCGACCAAAGGGACAACAGTGTCTTACTGAGTGGGCCCGACCACTGTTAGAGGATTATGCCATTGAGGAACTGATTGATCCAAGCCTGGGAATTCACTATTCGGAACATGAGGTCTATTGCATGTTACATGCTGCCTCATTATGCATAAGGCGAGACCCTTATTCTAGACCACGCATGTCGCAGGTTCTGCGAATGCTGGAGGGTGACACTGTCATGGACCCAAATTACATTTCAACTCCCAGTTATGATGTGGGAAACCGGAGTGGTTGATTTTGCTTTTTGGCCAGAAACGTAAGCAAAGACAGCGCCATTACGACAGTGGTTCCCCGTTGTAATTGTCACTCTGAGTACAAGGTTTGCCCAACTGGGAAAGCTACAAATTCAAGGGGGTCGACGACATGTGAGGAGTTAACAGTTAAAACGGTTCATGATTAAAATTGCAATATTGTTATGCTAAATATCTTTCTTGCCCAAGTATTTTGTAATTTGTAGTTTTCTTTCTATTTCTCTGCAATTAATCTAATTTTGTATCTGTATATAGTAAGTGAAAGTAGTATATAAATAATATATAGAAG	3550	0.4127	MSREQQKRVKQEKGSDGAEKVIVAVKASKEISKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSTSGSSSSEQKNDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEARKAQANWVVLDKHLRHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGAKKKDLEELCPLPSERDEMPGKQTKKKDDSLNSLKVPVVTPTSSPELGTPFTATEAGTSSVSSSDQGTSPFFISEMNGESKKEETIQENPELDDSISDTDSENLSTSSASLRFQPWIADLLLHQRSSQPKEERTERSQNRPQSVTTRALLEKFSRLDREAEIEISTYKTDFDFNGNVREAIALSRNTPLGPPPLCSICQHKAPIFGKPPRWFSYAELEFATGRFSRANFLAEGGFGSVHRGLLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLFIKTIVLNSSKVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEDYAIEELIDPSLGIHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRMLEGDTVMDPNYISTPSYDVGNRSG	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g03562	708	MobiDBLite	consensus disorder prediction	192	212	-	-
	Pste3g03562	708	MobiDBLite	consensus disorder prediction	215	255	-	-
	Pste3g03562	708	FunFam	Dual-specific kinase DSK1-like	12	167	-	-
	Pste3g03562	708	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	376	479	-	-
	Pste3g03562	708	Gene3D	Transferase(Phosphotransferase) domain 1	480	695	-	-
	Pste3g03562	708	Pfam	Protein tyrosine and serine/threonine kinase	408	684	IPR001245	GO:0004672\|GO:0006468
	Pste3g03562	708	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	525	537	IPR008266	GO:0004672\|GO:0006468
	Pste3g03562	708	Gene3D	HUPs	4	173	IPR014729	-
	Pste3g03562	708	CDD	STKc_IRAK	410	687	-	-
	Pste3g03562	708	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	480	694	-	-
	Pste3g03562	708	PANTHER	OS01G0750732 PROTEIN	156	693	-	-
	Pste3g03562	708	ProSiteProfiles	Protein kinase domain profile.	404	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g03562	708	MobiDBLite	consensus disorder prediction	192	287	-	-
	Pste3g03562	708	SUPERFAMILY	Protein kinase-like (PK-like)	388	697	IPR011009	-
	Pste3g03562	708	Gene3D	Phosphorylase Kinase; domain 1	376	479	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g03562	Pste-Chr3	28037058	28043209	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g03562	384	704	Trihelix Transcription Factor Family	AT1G70460	49.547	1.23e-96	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Pste3g03562		PK_Tyr_Ser-Thr	1.1e-39	CL0016