Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03560 TGAACAGGGATCAGCGGGTAATACAATAATGTGATAGTCTCGCCATATCCAATAATTTATCGGTAGAAGCATAGCTACTGTTGCTTTGCGTTTTGTCTTGAAGCAGTGGTTTCGTCTCAACTTCTTGGCCGTGGCGTTAGGGTTTTTGAAGAGCGATTTCAAGCGTGTACCCAATGATATGAATAAATGTGGCGAGTCTTCTATTGAGTCCTTTCGCTAGTAGCCGAATTTCTAATCATTTGCGCGTTTGCTTTACCATTCCGCATGGACGTGGAAGCGGAATCACCTCTAAACCCTACCATAAGACACAAATGTTCCGCTTGCTATAAGCAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAAGCTCCAACCATTCGGTACATCAGCCTAGGTGTGGGGTCTGTCGAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACAGGTCTTTTGCCAAAAGGAGTTTGTTCAAAGATTTTCTCTCAACGTGGGTGTCAACTTTGCATGACACTATTTGATAGTCCTGGGTCTCTCATTGCTCATAGAGACTCTTGTCGCTTATCTGCTCCTACTCCTCTAGGAACAAGTGCATTGCCCTATATAGATTCCCGATTTGATTGTCAAGATTTTTCTGACGAAAACCATGCTGGTGAGGGCACTGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGCGATGGTTCACTAGAACTTTGTGCCAGAATATCCTTGGTTGATGAAAGTGAAAACTTAATCTTTCATAGTTATGTACAGCCTCAAATGCTTGTTACTAACTACAGGTATGATATAACTGGATTGACAGAAGAGCATCTCAGAAATGCCAGGCCACTTAAGGAAGTTCGAGAAAAGGTATTGCAAATTCTGTACAATGGAGAATCCATCGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGACTTCTTGTGGGGCATGACTTAGCACATGATTTAGATTGCTTGAAAATGAATTACCCTGATCATATGCTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACCAACTTGGTTAGCCATTCGCTTAAGTATCTAACCAGAACATATCTCGGGCAAGTGGTTGACTCGGTAACAGACGAAGTTGCTGAGGCAGGAGTGATGATTGAGGTGGTGGCAACCATGAGGGTAGAGGAGTTGATGATGGTTATGAATTATGATATCCAAACTGGCACACATGACCCATTTGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGAGCTCAAATTCATCCAGAGGAAGTCCATGGAACATTGACTCCAAATAACAAAATTGTTGCGATGCCTGATAGCTGGATATCCAAGGAACTTGACAACCTCACACCAGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGTTTGGATTTGAGGACAAGATTGGCAGCCTAAATTATGGATCATTGCATTTGGTCACCACCATATCATACTCTGCATATTTCTTCAGAAGCTATGGGATGAGTTGGTAAATTGTTTTGCAATGATCTTTTTTGTGCATATCTTTCTACGCATCATGTTACCCTCCGGACAAGAAAACTATTGTGGCGTTTTGGTTTATATTTAGTTCAAACCACTTGTCTTTGTGTACAATGAAGACTTGCATACCTTATCATTATAATGAAGGCTTTAACTGCCGACACAAACTTAAATGGATCTAAACCTTGTTCTAGATCCAATTTCAACGGAGTGATTCTTGGATCCACGTTATCGATTGGTACAAGGAGTTTTCATTTTAAAATAACTTGTATTCATATAGGAATGCAATTTTTTTTTTTTTCGTAAAAGTAATACATTTTCTTGATTATTACGGGAAAATTTAGTAACATTTTATTAAGTTCCACG 1911 0.4003 MDVEAESPLNPTIRHKCSACYKQYKKKEHLIEHMKSSNHSVHQPRCGVCRKHCKSFESLREHLTGLLPKGVCSKIFSQRGCQLCMTLFDSPGSLIAHRDSCRLSAPTPLGTSALPYIDSRFDCQDFSDENHAGEGTGAVAMDCEMVGGGSDGSLELCARISLVDESENLIFHSYVQPQMLVTNYRYDITGLTEEHLRNARPLKEVREKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGQVVDSVTDEVAEAGVMIEVVATMRVEELMMVMNYDIQTGTHDPFEDCISVMRLYKRIRAQIHPEEVHGTLTPNNKIVAMPDSWISKELDNLTPDELYAMSRSDYKCWCLDLRTRLAA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03560 398 Pfam Exonuclease 139 282 IPR013520 -
Pste3g03560 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Pste3g03560 398 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 341 IPR047021 GO:0004527
Pste3g03560 398 SUPERFAMILY Ribonuclease H-like 139 338 IPR012337 -
Pste3g03560 398 CDD REX4_like 139 336 IPR037431 GO:0006364|GO:0008408
Pste3g03560 398 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Pste3g03560 398 Gene3D - 135 351 IPR036397 GO:0003676
Pste3g03560 398 SMART exoiiiendus 137 344 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03560 Pste-Chr3 28026857 28031546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03560 1 391 C2H2 Transcription Factor Family AT3G27970 46.939 8.60e-127 368