Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03559 ATGCCTAAGGTCTTCTTCATCCATGGAACAATTGAAGCCACCATCTTCAATGCCACACCTTACTCACCTTCGTTTCCCTTCAATTGTGTATGTACAGATGGAAAGCCTGCTTATGTGACCATCGAGATAGACAACAAGAAGGAGGCGGAAACGACCCAAGAACGTGAACGTCTCTGGAACCAAACCTTTCACATTCATTGTGCTCATCCAGCAGATTCACCTATCACAATTACACTGAAAACATCATGCTCTATTTTAGGGAAATTCCACATGCAGTCCCAGCGGTTTAAGGAAGAGAGCTTGATCAATGGGTTCTTCCCTCTCCTCATGGCAAATGGAAAACCAAACCCTCAACTAAAATTAAGGTTTATGTTATGGTTCAAGCCAGCAGATATAGAACCAGGTTGGACAAAGATACTAAGCAGTGGCGAATTTCAAGGGCTGAGGGATGCTTCATTCCCACTAAGGTCCAATTGCCAGGTTAAGCTCTATCATGATGCTCACCATTCATCTTCTTTCCACCCTCCTTTTCATCAATGTGGACTTCCAAGAAAGCTTTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTTATCTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCAGAAACCGAAATCCCACATGCTAGGGAGATAAAGCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAGAAACAAAGGTGTGATGAACACCCATGATGAGGACGCTTTTGCATACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACGGTGGACACCAGAACACCCAACTCTTCTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGATGGCCGATATGACACAGAGCAACATTCACTGTTTCAAACACTTGGGGAGGAATCACATTACCATGACTTCTACCAGACAAACATAGCTGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACGGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGATGTCTCTCTTCTAGTCCCCGCTAAAACCTTGGAAAATCTTATTCCCACATGCTCAAGCCCTCCCAAAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTGTCTGCTAGCCAATTGTTTAGAAAGCTAACTGTGGAGAGAAGCATCCATGAAGCCTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTATACATAGAAAACCAATATTTTATTGGGGGGTGCCATCTGTGGCAGAAAGATAGGCACAGTGGATGTAGGAATCTGATTCCTGTGGAGATTGCACTTAAGGTGGTTAGTAAGATTAAAGCAAGAGAGAGGTTTGCAGCGTACATAGTTATACCAATGTGGCCGGAAGGAGTACCTGAAAGTGAACCAGTTCAAGATATACTGCACTGGACCAGAGAAACCATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATGGAAAGTGGGGAGCCGGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTCGCAAACAGGGAAAAGAAGAGAAAAGAGGAGTATGTTCCACCACATTCTCCCTATCCTGCAACACAATACTGGAATGCACAAAAAAATAGGAGGTTCCCGGTTTATGTGCATTCCAAGATCATGATAGTTGATGACCTATACATATTAATAGGATCAGCGAACGTGAACCAAAGATCCATGGATGGAGAAAGGGACTCTGAGATTGCCATAGGGGCATATCAGTCTCAAGACCTTGTTGATGACAACCTGAGTAGTGGTGATATTCATGCATACAGAATGTCATTGTGGTATGAGCACACTGGAAGCGCCCAAGAGTTGTTCTTAAAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGCGGTCAATAGGAGATCACATGTGGAAAATCTACAGTAGAGAAGAAATCGTTGACATGGAAGGAGTGCACCTTGTAAGTTACCCTGTGCAAGTAACTCATGAAGGGTCTTTGAATGATGGCGATCATCATTTTCCTGATACAAAATCTCCAGTCAGGGGGAAGAGATCAAAATTCTTAGCCCCTGTATTTACTACTTAA 2262 0.4328 MPKVFFIHGTIEATIFNATPYSPSFPFNCVCTDGKPAYVTIEIDNKKEAETTQERERLWNQTFHIHCAHPADSPITITLKTSCSILGKFHMQSQRFKEESLINGFFPLLMANGKPNPQLKLRFMLWFKPADIEPGWTKILSSGEFQGLRDASFPLRSNCQVKLYHDAHHSSSFHPPFHQCGLPRKLWEDVYKAIEGAKYFIYIAGWSFNPKMVLVRDPETEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIRNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPNSSHAREIMSFLGGLDLCDGRYDTEQHSLFQTLGEESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDVSLLVPAKTLENLIPTCSSPPKERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALKVVSKIKARERFAAYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIMESGEPGHPRDYLNFFCLANREKKRKEEYVPPHSPYPATQYWNAQKNRRFPVYVHSKIMIVDDLYILIGSANVNQRSMDGERDSEIAIGAYQSQDLVDDNLSSGDIHAYRMSLWYEHTGSAQELFLKPESLACVQRMRSIGDHMWKIYSREEIVDMEGVHLVSYPVQVTHEGSLNDGDHHFPDTKSPVRGKRSKFLAPVFTT 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03559 753 Pfam Phospholipase D C terminal 674 742 IPR024632 -
Pste3g03559 753 Gene3D Endonuclease Chain A 170 415 - -
Pste3g03559 753 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 601 628 IPR001736 GO:0003824
Pste3g03559 753 PANTHER PHOSPHOLIPASE D 4 737 IPR015679 -
Pste3g03559 753 Pfam Phospholipase D Active site motif 295 331 IPR001736 GO:0003824
Pste3g03559 753 Pfam Phospholipase D Active site motif 605 628 IPR001736 GO:0003824
Pste3g03559 753 PIRSF PLD_plant 5 753 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pste3g03559 753 SUPERFAMILY Phospholipase D/nuclease 148 406 - -
Pste3g03559 753 Pfam C2 domain 37 108 IPR000008 -
Pste3g03559 753 SUPERFAMILY Phospholipase D/nuclease 420 685 - -
Pste3g03559 753 Gene3D Endonuclease Chain A 416 654 - -
Pste3g03559 753 SMART pld_4 294 331 IPR001736 GO:0003824
Pste3g03559 753 SMART pld_4 601 628 IPR001736 GO:0003824
Pste3g03559 753 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 294 331 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03559 Pste-Chr3 28002127 28004819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03559 29 753 Phospholipase D Gene Family (Wang group) AT1G55180 61.694 0.0 956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03559 3 28002127 28004819 Pste3g03559 3 28002127 28004819 ECH
Pste3g03559 3 28002127 28004819 Pste6g00987 6 3952563 3956168 PCT