Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03528 CTCACTCTCACCAATTCGTTTCACATTTTCATATAACCTCTTGTAACCTAGGGCTAAAGCTACACCCTACAGTTTCCCTTCTTTATGCTCCCCCTAAGTCTCAAACATAATACCAAAACTGGTCTTTGTTTAGTCATTGACTCTATGTACTAGCTAGTGGTTTGAGTCTGATAAGATTAAGATATAGTGAGAGAAAAAAAAAAGGAAATTGAAGCCATGGGACATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTATATCACAACTTATGGACACGGTTGCTGGAGCTCAGTCCCAAAACTTGCAGGCCTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGGGGAAGCTTCTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATTCTAGGCAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCATGGTCCTCCCAATGGTTCCATGGAAAGTTTCTTCACTTTAACTGACAATCCTATCCTAAGCTCCCATCATCACTTAGACCAGCTATACCTTCCCATCATCCCATCCCCATTCCTACAAGGGTTTGATCTTCACAATAATGATATCAAGATTGACATAAACAATTTTAATAATGCCAATTTCCTACATTTTCAGAATCCAATGCCAGAAACAGTGCCACCATCCCATAATATCCCATCTTTGTTTGAAGATACATGGTCGTCGTTGGGGTGTGTACCTATTCATCTAAATCCAAATCAAGAAAATCAAATAATGATCGCCAAAAGTGATACCACCCCACAATTTATTGTTGATAAATTCATTAATGCAAGTACATGGCAGCAGCACTCCGTGGAACCTCCCGTTGTGCCAAAAGTGTGTGAGAGAATTGAGGACTATGTCTGCAGCATCCCATATTCTTCTTCTGCTAATTCACAAGATCAACATAAGGAGGCTGTTGCGTGCTACACACCTGTTATTTGTCCACAAGATCAAACTGAGACACCGAATCAAGTGGATTATATTGATGCCCTCATCATGTCGTCCTTGCCATCCTCAACAACAACCTCTTCATCAGTATCATTCTACCAAGGAGACAAA 1248 0.4071 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHGPPNGSMESFFTLTDNPILSSHHHLDQLYLPIIPSPFLQGFDLHNNDIKIDINNFNNANFLHFQNPMPETVPPSHNIPSLFEDTWSSLGCVPIHLNPNQENQIMIAKSDTTPQFIVDKFINASTWQQHSVEPPVVPKVCERIEDYVCSIPYSSSANSQDQHKEAVACYTPVICPQDQTETPNQVDYIDALIMSSLPSSTTTSSSVSFYQGDK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03528 344 FunFam MYB transcription factor 6 66 - -
Pste3g03528 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pste3g03528 344 PANTHER MYB DOMAIN PROTEIN 55 1 176 - -
Pste3g03528 344 SMART sant 66 114 IPR001005 -
Pste3g03528 344 SMART sant 13 63 IPR001005 -
Pste3g03528 344 Gene3D - 11 67 - -
Pste3g03528 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste3g03528 344 FunFam Myb transcription factor 69 116 - -
Pste3g03528 344 CDD SANT 17 61 IPR001005 -
Pste3g03528 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste3g03528 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pste3g03528 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pste3g03528 344 Gene3D - 69 116 - -
Pste3g03528 344 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pste3g03528 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste3g03528 344 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03528 Pste-Chr3 27724031 27725514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03528 1 119 MYB Transcription Factor Family AT3G13890 96.639 1.61e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g03528 Myb_DNA-binding 1.2e-14 CL0123