Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03521 AATTAGTTTTGTTATGGAAATTTCATCCATCAGAGGGTTACTTGATATGGAAATAATGGAGGACCCTGCTTTTCTCCATCAGTGGCACTTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTACAACATAATGCATTCACTTATCCAAATTTTAACTCCAAAACTTCCATGGAAACTGCACTTGCTGATGTTGAAAGACCCACAAAACATCACAGAAACAACATCAGCTGGAATCCCAACAAAAGTGCTCAGACACCAGAGACACAACTTGTTTCTTTCCCGAATTTTTTTCAATTTGTGGATGCTAATCACATAAATCCATTGGGATTAGGGAAGGCCAATAAGGATGAGATGGTTTGTCCTATAACCAATAGCACAACTCCTCTGGACACCATCTCTCAAGGAAACTTGGGGAGTCATAACTATGTCTTCAAGGCATGCCAAGAGGGAAAAAATAGTGGGAAACGTTCTAAACTTTCTCAACCTCATGACCACATCATAGCTGAAAGGAAGCGACGAGAGAAGCTCAGCCAGCGGTTCATAGCTTTATCTGCCCTTGTTCCCGGACTACAAAAGATGGATAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAGTTGCAAGAGAAAGTAAAGGTTCTTGAGGAGGAACAAAATATGAAGAAAAATGTGGAGTCTGTGGTAGTTGTGAAGAAATTTCAACTATCCAATGATGTATACAACTCTTCTTCAGAATATGATGGTCCATTTGACGAGGCACTGCCTGAAATTGAAGCTAGATTTTGTGAGAGAAATGTCCTCATAAGAGTGCACTGTGAGAAAAGCAAAGGCGTTGTAGAAAAAACAATCCATGAAATTGAGAAACTCCATCTGAAAGTCATCAATAGCAATACCATGACATTTGGGAGATGTGCCCTTGATATAACAATTATGGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATCTTGCGAGAAACCTACGCTCAGCTTTTACATCTTTCATGTGATGACGTTCTGTTAGCTCATAACCGACTTCAAAAAGCATAAGAAGAATAGGAGTTACGGTCAACTATATATACAAGTTAAAGTTTAAATTATTTGGTAATATTTGTGCTTACATGGCCTTGTGTAATGTCTTCCATCTCATCTACTTCAAGCATATTCTCCTTTTTGCATGGCCAACTCGTTGACCATGTTATTGCTACCTTTTGCAAGTTTCAACAGTTACTATACACCTGGTTAGGCATTTTTTTTTGCA 1296 0.3897 MEISSIRGLLDMEIMEDPAFLHQWHLSSIDDPNLLPIAAAFGETLQHNAFTYPNFNSKTSMETALADVERPTKHHRNNISWNPNKSAQTPETQLVSFPNFFQFVDANHINPLGLGKANKDEMVCPITNSTTPLDTISQGNLGSHNYVFKACQEGKNSGKRSKLSQPHDHIIAERKRREKLSQRFIALSALVPGLQKMDKASVLGDAIKYLKQLQEKVKVLEEEQNMKKNVESVVVVKKFQLSNDVYNSSSEYDGPFDEALPEIEARFCERNVLIRVHCEKSKGVVEKTIHEIEKLHLKVINSNTMTFGRCALDITIMAQMDMEFCMGVKDLARNLRSAFTSFM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03521 343 Coils Coil 203 230 - -
Pste3g03521 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Pste3g03521 343 SMART finulus 170 219 IPR011598 GO:0046983
Pste3g03521 343 Pfam Helix-loop-helix DNA-binding domain 169 214 IPR011598 GO:0046983
Pste3g03521 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 228 IPR036638 GO:0046983
Pste3g03521 343 Gene3D - 161 238 IPR036638 GO:0046983
Pste3g03521 343 CDD bHLH_AtNAI1_like 168 238 - -
Pste3g03521 343 PANTHER BHLH TRANSCRIPTION FACTOR 42 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03521 Pste-Chr3 27682965 27685380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03521 164 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 54.891 1.90e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g03521 HLH 4.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03521 3 27682965 27685380 Pste3g03521 3 27682965 27685380 ECH
Pste3g03521 3 27682965 27685380 Pste2g01806 2 18469945 18474068 PCT