Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03492 CGTCTTTCCATTTTTACCAACCCTCTTCTGTTCTGTGTTACTTGCCAACAGAATTTCCCTTCCCTTCTGTCTTTTGAGTGTTCCATTGTTTCTATTTTTATTTCTGATTTTTAAACTCTCACTGCGTTCACTTCAGAGCTGAGCTGCCCCCGTTTTGTAGAATTCTATGGACCAAGATTTTGTCATGCTCGAGGATTTTAAGGTAGTGAATTTGAGTACACAAACTTACTGACTTCAACAATCCCGGTGAACCTGGAAGCAATGTCTTGTGCAAGTTTTTACACCCTAGAACTCTAACACTGGTTAAATTTCAATCAATTTTTATCTCCAACCTAAGTATGGAATACCCTTTTTGCCCCAAGGAAAGAGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTGGAGGCATCGACGTCATTAGATGGAGAATGAACAATTCGATATAAGAGGATATGCCCAATAACTTATCTGAGCTCATAAATTTTGATACTTATGCTAGCCTGTGCAACAACCCATCCCTAACTGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCCTCATTATCATATCCATTGCCCGATGGATTCAATCTAGTCCAACAGAGCAATGCACAAAGCTATATGTCAGGAATTGGCAGAAATAACAATGATATCGAAAGCTCCCCCATTTATGGGGAGAAAGTTATGTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAACGACACAAATGAAGCAAATAACTTGAAATCTAAGCCAAAAGTTAACGACTCTTCTCAAAATCCTAATACCTCTGATACAAGCAATTATATAATGTCAGGGCCGCCTGGTTTGTCACTTGACCAGAGAATGCTGAGGGCTCTATCCTTCTTTAAGGAATCAGCTGGCGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGGTGATCAATTCATATTAAGCACGACTGAGCAACCTTATTTGCTAGATCAAATGCTCGCTGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTTCAGAAGGAAAATCTGGTTTTTTCCAAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTTCCTGAGTGGACTTCTAATGTTGGTTATTACCATATCATTGAGTACTTAAGGTTTGAGCATGCAGTTAATCACAAGGTTCGTGGATCAATTGCACTTCCCATATTTGATCTGGACTCTGAACTGCCATGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTTGTCAAGCACTACAGCTTGTAAATTTAAGGACTGCCCAACCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAGAAAAGCTACTTTGAATGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGATTCCCTGTTGTTACACTGAGGGCTCAAGAGGTGAAGCTACAAGAATACAAATTAAAGGGGGTCATTCAACTTCTAGTAGAAAAACCATACTGTGCATTGAAGAATCTGCTTGCTATATAACTGATAGAGCAATGGCAGGATTTATCCGTGCATGCACTGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGCAAAGCTCTTCAATCAAATCATCCCTTCTTCTATCCTGATGTCAAGACACATGATATTAGTGAATACCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTATATATTGGAATTCTTTCTGCCTATCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTGCTAGATAACCTCTCAAGTACCATGCAGAGGATTTGTAGTAGTTTGAGGACAGTTTCAGATGCCGAACTATCAGGAATAGAAAGCTCAAAAACGGGGTTTGGAAAGGAAAAAGCCCCCAGTCTTTTTCCTTTGTCAAGTAGAAACTCTGAAATTCCTTTAATAAATGATGGCTGTGATCCTGTCCAGAAGATGTCATTGAAGGCAATTAACCTAAGAAACAATGAAATTGAGCCTTCCCGTAACCAGTGCTGTGGTGGTTATTTCTTCTTTTGTTTGAAAGAAAATGCACAAGAGATGTTACTCCAATACTTTTCTGTTGGAATTGAGGATTATGAAGCAAATGGATCAAAAAGACACGTACCAAAAAATAGAAGTGCATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATTGGTGTTTGTCCGACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACTGACTGGGCTCGATTCTATCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGTGCATTTGTGGCAGGAGGGTCAATCATTCGGGAAATTGATGAACATAAAAGTCTTCTCTTCCCTGAGAAAACTACTATAAAGGACCCTCTGCCTGTTACAGAAGATGCAGTCTCAGTACCACCTGTGCCTTGCAGTGAAGGTGAGAAATTTTCAATTAAGTTGGAGGGAAAATTGAGGAAAACCAATGCTTCTTCAGTCGATTGCAGTGAAGATTCAAAATCAATGGCAATCGAGGATGGTTTGTGCCAGTCGCCAAGTCTTTGCACCAAGTTGCAGGATTGTTCTGAACAAGCTTGTTTGGGCTTTGTTCTTGCAAAAGAGCAGGATAAGCAGATTTTGAACAAGGGTGGCATGCGAGTAGAAAAATTTAAACGCAATGTTGTTGGCCAGAGTGCAAATTTCTTGATTGGTGATACGATGGATATTGGTGCTGATGGGGATGATGGGGTTGTTGAACCTAACCACCCTAGTTCCTCAAGCATGACAGACTCATCTAATGACTCTGGTTTAATGATGCATAGCAGTTCATCAGGTTCACAGAGTTTCGAGAACCAAAACCACTCCAAAGTCAAATCAACCATTGTTGACAGTGGGTCAAAACTAATTGTCAAAGCTACCTATGGGGAAGACACCATTCGTTTCAAATTTGATCCATCTGCAAGTTGTTTCAGGCTATATGAAGAAGTTGGAGCAAGATTCAAACTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACGCTGACTTACAAGAGTGTATAGAAATATTGGATGATATTGGCACGCATAGCGTCAGGTTTCTTGTTCGTGCGATGCCTTTTGTTTTAAGCAGCTCTGGCAGTAGCAGTAGCTACTTGGGAGGCAGCTCAGAGCATATGGGATGTGGTGGGTGA 3382 0.4075 MPNNLSELINFDTYASLCNNPSLTDQILANELPSFASLSYPLPDGFNLVQQSNAQSYMSGIGRNNNDIESSPIYGEKVMCQQMDTLLGFLNDTNEANNLKSKPKVNDSSQNPNTSDTSNYIMSGPPGLSLDQRMLRALSFFKESAGGGILAQVWVPIKHGDQFILSTTEQPYLLDQMLAGYREVSRTFTFSSEGKSGFFQGLPGRVFTSKVPEWTSNVGYYHIIEYLRFEHAVNHKVRGSIALPIFDLDSELPCAVLELVTTKEKPDFDRELEIVCQALQLVNLRTAQPLRCLPQCLSNNRKATLNEIVDVLRSVCHAHRLPLALTWIPCCYTEGSRGEATRIQIKGGHSTSSRKTILCIEESACYITDRAMAGFIRACTEHHLEEGKGIAGKALQSNHPFFYPDVKTHDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPINMRGSSEQQLLLDNLSSTMQRICSSLRTVSDAELSGIESSKTGFGKEKAPSLFPLSSRNSEIPLINDGCDPVQKMSLKAINLRNNEIEPSRNQCCGGYFFFCLKENAQEMLLQYFSVGIEDYEANGSKRHVPKNRSASEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKILTGLDSIQGVEGGLKFDPSMGAFVAGGSIIREIDEHKSLLFPEKTTIKDPLPVTEDAVSVPPVPCSEGEKFSIKLEGKLRKTNASSVDCSEDSKSMAIEDGLCQSPSLCTKLQDCSEQACLGFVLAKEQDKQILNKGGMRVEKFKRNVVGQSANFLIGDTMDIGADGDDGVVEPNHPSSSSMTDSSNDSGLMMHSSSSGSQSFENQNHSKVKSTIVDSGSKLIVKATYGEDTIRFKFDPSASCFRLYEEVGARFKLQNGSFQLKYLDDEEEWVMLVNDADLQECIEILDDIGTHSVRFLVRAMPFVLSSSGSSSSYLGGSSEHMGCGG 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03492 975 CDD PB1_NLP 869 949 IPR034891 -
Pste3g03492 975 Gene3D - 865 949 - -
Pste3g03492 975 MobiDBLite consensus disorder prediction 821 852 - -
Pste3g03492 975 MobiDBLite consensus disorder prediction 97 123 - -
Pste3g03492 975 PANTHER PROTEIN NLP8 71 961 IPR045012 GO:0003700
Pste3g03492 975 SUPERFAMILY CAD & PB1 domains 863 948 - -
Pste3g03492 975 Pfam RWP-RK domain 592 640 IPR003035 -
Pste3g03492 975 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Pste3g03492 975 MobiDBLite consensus disorder prediction 813 852 - -
Pste3g03492 975 SMART PB1_new 868 950 IPR000270 GO:0005515
Pste3g03492 975 Pfam PB1 domain 871 948 IPR000270 GO:0005515
Pste3g03492 975 ProSiteProfiles RWP-RK domain profile. 574 660 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03492 Pste-Chr3 27506723 27512499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03492 1 965 NLP Transcription Factor Family AT2G43500 47.575 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pste3g03492 PB1 1.2e-17 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03492 3 27506723 27512499 Pste3g03492 3 27506723 27512499 ECH
Pste3g03492 3 27506723 27512499 Pste1g02059 1 6461443 6465678 PCT