Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03477 GGAAAATCAACATCGGATATCTCTTTCATTTCTAGGGTTTCAAACAAGTATTGACAATAATAAACTAGTTTTGGGTTGGGAATTTGAAAAAGATAGTTATCCATTGCTGTCGTTTTCGAATTACAATGCCGCTTTCTTCCAATTCCATGGAAGGCGAGGAGTGGGGAACGCCCACCAACAACCTCTGGGTCGGGAATATGCCGCCGGAAGTCACCGATTCCGATCTCATGGAACTCTTCGCTCCCTTCGCTTCACTCGACGCATTCATCTCCTATTCCTCACGCACCTTCGCTTTCGTGTTGTTCAGACGCGTCGAAGACGCCAAGGCCGCTAAAACCAACTTACAAGGCGCGTCGTTGCGCGGCTTTCACATCAGAATCGAGTTTGCTAGACCGGCGAAACCGTGTAAACAATTATGGGTGGGTGGTTTCAGTCACGCTGTTACGATGGAGGATTTGGAAGTGGAATTTCGCAAATTTGGTAAGATTGAGGATTTGAAGTTTTTCAGAGACCGTGGTACTGCGTGTGTTGAGTTTTTCAATCTGGATGATGCTACTCGGGCCTTGAAAGTCATGAACGGGAAGCGTTTAGGTGGAGGCCAGATTTGTGTAGACTTCCTTCGATCACAGTCTACGAAAAGAGATCATTTGGTTGATAATGGGCAGTTTCAGGCTAGACCACAGTATTTGCAACCTTCAATGGGGAGGAGTAGTCAACCCAGTAAAATTTTGTGGATAGGTTTCCCTCCATCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGGCATTATTCATTTGTTGAATTTAGGAGCATTGATGAAGCTCGGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTTTGTATTCAAGCAGTGAGCTGGCACCTGGGAAAGATTACCCTGGGTTTTATCCTGGAAGTAAAGGGTCTATACCTGAAGGATTAGCTAATGATCATCCATTTCGACCACTACAAACAGATGGATTTGGTCATAATGGCCCTATGGTTCCAAATAATTTTCCTGGACAATTGCCACCTGGTGGTATTACTGGACCTAATGTCCCAATGCAGCCTTATGGTCCACAAGGTCTTGAGCCTCTTATCTCTGGTCCTGATTTTAATGATATGAGCACACTACACAAGTTTCAGGATGCTAGCTCCAAAAGTCAGATGGGTCAAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGAATGCTTCCTTCTCCTATGTCTGGTATTAGGCCTCCTACAAGATCCACCTCTGGTGCATGGGATACACTTGATGTCAACCAATTTCAGAGAGATTCTAAACGTTTAAGGATGGATGATGCTTTGTTCGTTGGTGATGCTCCGTTTCCTTTAAGGAATATAGATGATCGTAGATTAGGATTAGAACAACCATTTGCAAGTGATCCATTTATTGATGGAAGTGGTTCTGGTCCAAAGAGTCGCCTTGGTCCAGTTGGCACTAGGATCACATCTGGAGTACCTGGTTCTGTCGAACCTGATATTGATCATATATGGCGTGGAGTTATTGCAAAGGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGGACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTAGATATGCTAACAAAACACTATGCTGATGCAATTGGCTTTGACATTGTCTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTCAAAGTAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCAGAACGTTTATATGGTGTGGTTCTTAAATTTCCATTAGTTCCAAGTAGCACGTCTATCCAACAAGCTATGCATTTGCCTTCACCCTCTACTCAGTATATGCAACAGATTCCCCCTTCTCAAGCTGAGTTTGGCTCTATCTCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTATTCCAGGAGGATTCTAAGCTTCCACATAAACCACTTCCGCTAGCTACAAGTGCTCCCCCTTCAGCTCAATTTGTTCCTCCTGATTATGCTCCTACTTATACTGCTTCTGCACCCCAATCTGGAGTTACATTGACACCTGAACTTATTGCAACTTTAACTTCTTTAATCCCTTCAACTACACAATCATCAAGCACTAGTGGCATAATGACAATGGTTGGTCCCTCTACTGTGAAGCCACCTTTTCCTCCTGTTCCACCTAATGATGGAAATCAATCTCATTTGTGGAACCAAGATCAACAAATTGCACATCTATCTAATCATCCCCCTCAACAGTTTGCGAGTATTCATAATGCTCAATATCAACCTTATCCACCTGCATCTTCTACTGATCACTCTGCTCAAGTGGTCTCCGCCTCTGGAAGCTCTCATTTTCAAGATACCACTTCCAGTCTTCAGCAATTAGGTGCTGTTTTGTCTACACCCATGACTAATTTCATCATACCTCCTCAAAGTGGACAGGTAGGTGTGTCTCCTCAAGTCAGTCAACAGTATCTGGTGGAAGTCCCCCATGGCAGTGAGAAAGGCTATGGAGTGGTTCAAGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCATTCCAACAACCTAATAATTTTATTTCCTCGTCCAACCAAGTTGCCAATGCCGCATCACAACAACAAACTGTGATGCCCTATACAGTGGACAAAGTTAATTCTGAGCCCCCAAATCAGCAAGTTCAACCTGCTTTATTTGGAGTTGGCCAGGGAATGTCAGAATTGGAGGCTGATAAGAATCAGAGATACCAATCTACTCTACAGTTTGCTGCCAACCTTCTCCAACAGATACAACAGCAAACGCCAGGGGGGCATGGAAATCAACAATAA 3011 0.4347 MPLSSNSMEGEEWGTPTNNLWVGNMPPEVTDSDLMELFAPFASLDAFISYSSRTFAFVLFRRVEDAKAAKTNLQGASLRGFHIRIEFARPAKPCKQLWVGGFSHAVTMEDLEVEFRKFGKIEDLKFFRDRGTACVEFFNLDDATRALKVMNGKRLGGGQICVDFLRSQSTKRDHLVDNGQFQARPQYLQPSMGRSSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITILYSSSELAPGKDYPGFYPGSKGSIPEGLANDHPFRPLQTDGFGHNGPMVPNNFPGQLPPGGITGPNVPMQPYGPQGLEPLISGPDFNDMSTLHKFQDASSKSQMGQSWKRPSPPAPGMLPSPMSGIRPPTRSTSGAWDTLDVNQFQRDSKRLRMDDALFVGDAPFPLRNIDDRRLGLEQPFASDPFIDGSGSGPKSRLGPVGTRITSGVPGSVEPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKVKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSIQQAMHLPSPSTQYMQQIPPSQAEFGSISVKEEQVLPMDYNRLFQEDSKLPHKPLPLATSAPPSAQFVPPDYAPTYTASAPQSGVTLTPELIATLTSLIPSTTQSSSTSGIMTMVGPSTVKPPFPPVPPNDGNQSHLWNQDQQIAHLSNHPPQQFASIHNAQYQPYPPASSTDHSAQVVSASGSSHFQDTTSSLQQLGAVLSTPMTNFIIPPQSGQVGVSPQVSQQYLVEVPHGSEKGYGVVQGTDASVLYSSKAFQQPNNFISSSNQVANAASQQQTVMPYTVDKVNSEPPNQQVQPALFGVGQGMSELEADKNQRYQSTLQFAANLLQQIQQQTPGGHGNQQ 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03477 961 SUPERFAMILY RNA-binding domain, RBD 16 169 IPR035979 GO:0003676
Pste3g03477 961 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 90 - -
Pste3g03477 961 SUPERFAMILY RNA-binding domain, RBD 190 273 IPR035979 GO:0003676
Pste3g03477 961 CDD RRM_SF 97 163 - -
Pste3g03477 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Pste3g03477 961 CDD RRM_SF 202 268 - -
Pste3g03477 961 MobiDBLite consensus disorder prediction 451 470 - -
Pste3g03477 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Pste3g03477 961 CDD RRM_SF 20 86 - -
Pste3g03477 961 Gene3D - 194 277 IPR012677 -
Pste3g03477 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Pste3g03477 961 FunFam Flowering time control protein FPA 10 92 - -
Pste3g03477 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 83 IPR000504 GO:0003723
Pste3g03477 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Pste3g03477 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Pste3g03477 961 FunFam Flowering time control protein FPA isoform A 93 193 - -
Pste3g03477 961 FunFam flowering time control protein FPA 194 286 - -
Pste3g03477 961 Gene3D - 94 193 IPR012677 -
Pste3g03477 961 Coils Coil 932 952 - -
Pste3g03477 961 MobiDBLite consensus disorder prediction 780 807 - -
Pste3g03477 961 Gene3D - 4 93 IPR012677 -
Pste3g03477 961 MobiDBLite consensus disorder prediction 365 405 - -
Pste3g03477 961 Pfam SPOC domain 483 600 IPR012921 -
Pste3g03477 961 SMART rrm1_1 96 163 IPR000504 GO:0003723
Pste3g03477 961 SMART rrm1_1 19 86 IPR000504 GO:0003723
Pste3g03477 961 SMART rrm1_1 201 269 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03477 Pste-Chr3 27381268 27387108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03477 2 263 Eukaryotic Initiation Factors Gene Family AT4G34110 24.390 1.16e-11 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03477 3 27381268 27387108 Pste3g03477 3 27381268 27387108 ECH
Pste3g03477 3 27381268 27387108 Pste1g02089 1 6555417 6569634 PCT