Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03455 CATGTTTATCGATTGATTTGTCCGTTCTAGTTCTTCCATTATATATATGGTACCATGATACGCTATGCAATCACTGACTTGGATTCTGTTTCCTTGGATTCAAAAACTTGATTGGCAATGTTGTAAAAGGCTGAGTGTTTGTGGCAGTTCCGAAGGAATCATACTTAATCTCTTCAAGCACGGTTCGTAACACATCGAAACGAGGATGTTGCGCCATGCGATTCAAAGAGTGAGGAAGTTGAACATTATGAGGCCTCAGATCTCTGCTTTGGAAAGGTCCCATTTGTCAACTGCTGTTGAACCATCTTCCAATAAGGGCAATCCACCGAGGGTTCCAAATCTTATTGGGGGCAGTTTTGTTGACTCAAAATCATCGACTGTCATTGATGTTATAAACCCAGCAACGCAAGAAGTTGTTTCTCAAGTTCCTTTGTCTACGGATGAAGAGTTTAAGGCAGCTGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGTAACACTCCAATCACAACACGCCAACGTGTTATGTTGAAGCTTCAAGAGCTTATACGCAGAGATATGGATAAACTTGCTCTGAATGTGACCACTGAACAAGGAAAGACATTGAAGGATGCACAAGGAGATGTATTTCGCGGTTTGGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATGTTTCCAATGTATCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTGGCTGTTACCTGTGGTAATACCTACGTTCTAAAACCATCCGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCATTAGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGATGATGACGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTTCTAACATGGGAGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTTAATGCCTTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAACCATGGGAAGCTAAACTTGTAGAGCATGCCAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGGTACAGACCTTGGTCCTGTGATCAGCAAAGAGGCAAAGGAGAGAATACACAGATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTGGACGGAAGAAATATTGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTAGCAGATATTACTGCCAACATGGAATGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATCATCAACAATAACAAGTATGGAAATGGTGCTTCTATATTTACCACATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATAGAAGCTGGGCAGGTTGGCATCAATGTCCCCATCCCAGTTCCTCTGCCCTTCTTCTCATTCACTGGGAATAAGGCATCGTTTGCTGGTGATCTCAACTTCTACGGCAAGGCAGGGGTTAATTTCTATACACAGATCAAGACAATAACACAGCAATGGAAGGATTCAACTGGCGGCAGCAAGATTAATTTGGCAATGCCAACCTCTCAAAAATAATGTTTATAGCCACAGCGTGTAAAATAATGTTTCTGTTTCTGAAGCCTTTCTTTTCTTCTCTTCTTAAATAAATGTCAAGGGCCCACTCCTGGTGTTATCCATTGTCCTTTTATCGTGATCCTTATCTGTCTCGTGACTCCACGTCATTCTTTTGCTTCTTTTCTAAAGTGCCAGCCTAATCCATTAATATAATACCATATTCATCCACAACAAATGGGGTTAGTGGACAAAACTGACTTAAAATATGTGAAGAATTGAATTTACTTAAATTTTGGAGGAAGTAAATCAA 2057 0.4166 MLRHAIQRVRKLNIMRPQISALERSHLSTAVEPSSNKGNPPRVPNLIGGSFVDSKSSTVIDVINPATQEVVSQVPLSTDEEFKAAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTYVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGGSKPWEAKLVEHAKALKVNAGTEPGTDLGPVISKEAKERIHRLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILADITANMECYKEEIFGPVLLFMEADSLEEAINIINNNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSTGGSKINLAMPTSQK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03455 520 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Pste3g03455 520 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 8 518 IPR010061 GO:0004491
Pste3g03455 520 CDD ALDH_F6_MMSDH 43 502 IPR010061 GO:0004491
Pste3g03455 520 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 271 471 - -
Pste3g03455 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 271 497 IPR016162 GO:0016491
Pste3g03455 520 Pfam Aldehyde dehydrogenase family 51 498 IPR015590 GO:0016491
Pste3g03455 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 469 IPR016163 GO:0016620
Pste3g03455 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 270 IPR016162 GO:0016491
Pste3g03455 520 SUPERFAMILY ALDH-like 40 503 IPR016161 GO:0016491
Pste3g03455 520 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 502 IPR010061 GO:0004491
Pste3g03455 520 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03455 Pste-Chr3 27169958 27176524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03455 12 486 Aldehyde Dehydrogenase Gene Family AT2G14170 78.455 0.0 786