Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03451 TATGATATTATTCTTCTTCGAATGTCCAAACCTCTCGTTAGTTAGGAGGAGAAAGGATCGAAGGAAGAAGCACAAAGCAAGACACTTTTCCATCCTCTTCACCTTGCTCTCTAATCCTGGTTGCTGTGCCCTAGATTTTCTCTATCTATCCCTTTCCCAATCCATTCGATCGTACCTGAATTCTTAACTCTCGATCCTCTCTAGGGTTCCCATGGATTCCGAGGACGATATGCACGACGCCAACGATGTTGAGTCCCTCGATGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCATGGATTACTACAGTGACTACGATGACGACGCCGATGATTATTTCGACGATGCCGACGATTCTGACCGGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACTATATTGAAGGAATCAGATATCCGGCAGAGGCAGGAAGATGACATCACTAGAGTAGCCACAGTTCTTTCCATACCGCGAGTTTCTTCGAGCATCCTACTTCGTCACTACAATTGGAGTGTTAGTAAGGTACATGATGCTTGGTTTGCTGATGAAGATCAAGTTCGGAAAACAGTTGGTTTGTTGGAGAAGCCAGTTGTCCAGAATTCTAATTCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCATGCACGGATTGAATCTGCTGCTTGTGGTCATCCTTACTGCTATTCATGCTGGGCAGGATATATTGGCACATCTATTAATGATGGTCCTGGATGTTTGGTGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCCGATGAAGATAAAGAGAAGTACGATCGTTATCTTATTAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGCCCTGCACCTGGTTGTGAATATGCCGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTTTCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTTGACTGTGGAACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAAAGGACGGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGGGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAACTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTTAAATGGACATATGCATATGGTTACTATTTACCCGAACATGAACATGCTAAAAAACAGTTCTTTGAGTATTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTCAATGCTGATGGTCCATCTAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATCTGGTGAGGGCATTGGAGAATGGATTATCTGATGTGGATAGTAATGGCGCTGCTTCCAGCAAAGCTACTAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGTGGAAGAGGAAAAACGACTATTCGGACTAGCATATCCAACCGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATGTTAGGTCTGCAAGCACATGCCAGATGTGCAATCAACAACGTCGATGAACATGGATCCCCTCCATTAGAAACACGTCTTCAGCCTAAGGCCATTGCACAAAAAGCTGAATGGAGTCTTGACTTACAGTTATATCATTTGCTGGCTCTTTTTGTAAGGCTATTTACTGTGAAAGGGGGTTAAGTCGCGTAAGAAAGGTTATCCTCCTTGCTCTCCTATTGAATACATCCCAATTTAATGTATATAATGTTTTATCTTAAAATTTACGTATGGGGTTTATGCAACAGGCTTCTGTAACTGAATATCATATACAGCACATGCTGGAGATGAACACAAATGTGCTTGTTTGTGTCCTGATTTCTTCTAGTAAATCTGCAGCTTCTTTAATTTACCGTGAGTCAGATGTGTATAAAGC 2349 0.4266 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDADDYFDDADDSDRIESRRPEQNFTILKESDIRQRQEDDITRVATVLSIPRVSSSILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVVQNSNSRELTCGICFEMYPHARIESAACGHPYCYSCWAGYIGTSINDGPGCLVLRCPDPTCGAAVGQDMINLLASDEDKEKYDRYLIRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKTTIRTSISNRMTDDNHWSCEHCTYANVRSASTCQMCNQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03451 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Pste3g03451 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pste3g03451 590 MobiDBLite consensus disorder prediction 1 59 - -
Pste3g03451 590 SMART zf_4 564 588 IPR001876 -
Pste3g03451 590 Gene3D - 560 590 - -
Pste3g03451 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Pste3g03451 590 SUPERFAMILY RING/U-box 208 277 - -
Pste3g03451 590 CDD Rcat_RBR_ARI7-like 293 347 - -
Pste3g03451 590 Gene3D - 266 521 - -
Pste3g03451 590 SMART ibrneu5 274 344 IPR002867 GO:0008270
Pste3g03451 590 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pste3g03451 590 MobiDBLite consensus disorder prediction 1 48 - -
Pste3g03451 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pste3g03451 590 Pfam Ariadne domain 357 519 IPR045840 -
Pste3g03451 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pste3g03451 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Pste3g03451 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 220 IPR013083 -
Pste3g03451 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Pste3g03451 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pste3g03451 590 CDD BRcat_RBR_ANKIB1 215 279 - -
Pste3g03451 590 SUPERFAMILY RING/U-box 133 220 - -
Pste3g03451 590 MobiDBLite consensus disorder prediction 522 540 - -
Pste3g03451 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Pste3g03451 590 SUPERFAMILY RING/U-box 289 337 - -
Pste3g03451 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Pste3g03451 590 MobiDBLite consensus disorder prediction 522 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03451 Pste-Chr3 27132902 27147219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03451 17 589 ARIADNE family AT1G65430 71.429 0.0 848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03451 3 27132902 27147219 Pste3g03451 3 27132902 27147219 ECH
Pste3g03451 3 27132902 27147219 Pste1g02141 1 6824993 6832714 PCT