Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03440 GAGAGGGAAGGACAGAGCATAAAATAAAGATTTATGATTTGGAAAATGTTGATGAAATTACAAAGGTGGATTCAGTGGCAGCAGTCTGCGCTTGACTCCTTGTGTTGTGTCTAGGAAACAGCACTGAGTATTTTCCATTTCTATTCTTTTCTAATTCTAATTTCTTTCCACACTCTCTTCTCTGTCCATTCTTCTCTCTTCTCTCTTCTCTGCACACACTCTTCTCCTTCTCCTCTTAGGGTTCCGCCACTGTCACTGTGAGTGATGCTTGCTGACAAATGGAGAGTCTGAATCATCGGAGCGACATCGGAGAACTGCTTCCGCCGCAGCCGCTTCCCATGCAGTTAGATGCGTATCAATCCTTCCATTACGCCGATGGTTCCGATGAAGGGGAAGAAGCTGCTCCCCTTCCCCTCCCCAATGCTTCTTCTGCTATCAGAACCAGCGAACTCACCATTTCTTTCGAAGGCGAGGTCTATGTTTTCCCCGCAGTTACCCCAGAAAAGGTGCAGGCTGTATTATTACTCTTGGGATCGCAGGAGATGCCAAATAGTGTCCCCAACTCTGACTTTTTGTTGCAGCAAAATTGTCAAGACATTAGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGAATTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTATTCTTGCCGTAAAGAGGTTGCCCAGAGGATGCACCGTAAGAATGGTCAGTTTGCATCATTGAAGGAAGATTACAAATCTCCTGCTGAAAACTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTATTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGGCTACTCCAGCTATGCGTCGAGGACCGGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAACAGGAAGGGTTCCTTTTGAACAAAACGAACTGGATACTTCAGCTGATGTAAAGCCTTCAACAACAGAAGCAGAACATTCTTGTGCTAAACAGGACAAAGAGCAGAGAAGCCCTGAGGAAACTAAGCCTGTGCAAATGGATTCCAAACGGTCACCTGAGAAGATAAATGAGCAGTTTATTAGCGGAACTGCTGAATCAGTTACTAACAGCTTGTCCATCCAAGTGGAGAATCATGCCCTTAGTCTGCGCGAGCAGGATGCTCTTGAGGATCTTGACGCTTCCGGGACTGAATTCGAGATTCCTTCAGGTTTTGATGAGCAGGTGGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGATCTAGAGATATTGCTGTGCGCAATCATGGTCTGTCCACAATGGAGATGAATGTGCACTGCCGGTTCAACTAACATTAAACTTCTGGAAATAGTTTACGTTTTATAGACAAACTATTTCTGGAAGCACTGTGAATTATATGATTGTAGACTTACAATCTTCTTACATGAGAGTTCCTGTATATCCTCTTGGACCAGATTTGATTTATATAATGTGAATAGTTCAGTTTTACCTTCTGCCGTATTTAACATTAATTTTGTACTTCGTTTTGTTTACATGAAACGAAGACATGAAAAACGAGAATAAACTAGCCCAGAGGAATAGCAAGGAATGAAGTCTGTGGGCAATTTCACC 1692 0.4332 MESLNHRSDIGELLPPQPLPMQLDAYQSFHYADGSDEGEEAAPLPLPNASSAIRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGSQEMPNSVPNSDFLLQQNCQDIREINDPSRSSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSSNGTPCPESIERRCQHCGISEKATPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGRVPFEQNELDTSADVKPSTTEAEHSCAKQDKEQRSPEETKPVQMDSKRSPEKINEQFISGTAESVTNSLSIQVENHALSLREQDALEDLDASGTEFEIPSGFDEQVDIDDSNMRTYWL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03440 353 SMART tify_2 51 86 IPR010399 -
Pste3g03440 353 SMART GATA_3 185 238 IPR000679 GO:0006355|GO:0043565
Pste3g03440 353 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
Pste3g03440 353 Pfam GATA zinc finger 191 227 IPR000679 GO:0006355|GO:0043565
Pste3g03440 353 ProSiteProfiles CCT domain profile. 122 164 IPR010402 GO:0005515
Pste3g03440 353 Pfam CCT motif 122 163 IPR010402 GO:0005515
Pste3g03440 353 PANTHER GATA TRANSCRIPTION FACTOR 28 48 332 IPR045280 GO:0006355
Pste3g03440 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 240 - -
Pste3g03440 353 Pfam tify domain 55 85 IPR010399 -
Pste3g03440 353 CDD ZnF_GATA 190 233 IPR000679 GO:0006355|GO:0043565
Pste3g03440 353 Gene3D - 185 243 IPR013088 GO:0006355|GO:0008270
Pste3g03440 353 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Pste3g03440 353 MobiDBLite consensus disorder prediction 256 285 - -
Pste3g03440 353 MobiDBLite consensus disorder prediction 239 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03440 Pste-Chr3 27050055 27056461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03440 57 243 Tify Gene Family AT1G51600 54.500 2.74e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste3g03440 CCT 4.2e-14 CL0281