Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03419 ACTTACGCTTATTAATATTATAAGTTCCTCTTTCAACTTTTTCGTCTTGTAACTGCTTTATCTTCAACTTTTTCCATTTTCTGCTACCCAAGGACTCTTGCTCTCAGATTCTTCTTCAAGACACTTGTTTCTTTTCCTATTTCAAGAAACCGGGAGATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGACAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTGTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCTAGTATGCAGCAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGATTGGATCGCCCCTCAATTGAGCTGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGAAAAGAGTCGTGAACTGGGGCAGTTGAATGGGGAAGATCTGCAAGGGTTGACATTACAAGACCTGCAGAAACTAGAGGAACATCTTAAAAGAGGTTTGACCAATGTTTCAAAAGTCAAGGTTTGTGCCCTATGA 591 0.4146 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPSIELQIESDSNDILRKKVEEKSRELGQLNGEDLQGLTLQDLQKLEEHLKRGLTNVSKVKVCAL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03419 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 FunFam Transcription factor, MADS-box 13 82 - -
Pste3g03419 144 ProSiteProfiles K-box domain profile. 85 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste3g03419 144 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pste3g03419 144 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pste3g03419 144 Coils Coil 92 112 - -
Pste3g03419 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste3g03419 144 Pfam K-box region 93 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste3g03419 144 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pste3g03419 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03419 Pste-Chr3 26924678 26932232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03419 1 140 MADS-box Gene Family AT2G22540 55.634 1.45e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste3g03419 K-box 3.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03419 3 26924678 26932232 Pste2g01755 2 18040450 18045689 PCT