Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03387 ATGAGGAAGCCAGAATCATGTAGTGCTAAAAACAACAGCAACGGTAGCAAGCTTAGAAAGGGTTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGTTAAATAATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGTCTGCAAAGGTGTGGCAAAAGTTGTAGACTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCGCAGGAAGAGGAACTCATCCTCCACTTGCACTCCCTTCTCGGCAACAGGTGGTCTCAAATAGCGGCGCGTTTGCCTGGACGAACCGATAATGAAATAAAGAACTTCTGGAATTCAACTATAAAGAAAAGACTCAAGAACATCATGTCGTCCACGACCACAACTTCAAACTCACCAAATGTAAGCGAAACCTCGTCTGAGCCTAGTAAAGACCTCAACATAGGAGGGTTTATTTCTACACAACATCATCAATATGCACATGCAAGCTTTGTTCCTATGCTCAGTTCATCTCAATCACCATCAACGCAAACCACAGTTTTCAATACCACGATTAACAGGTTACCCATGATGGAGCATGGACTAAACATGTCACATGCTGACTTTGAAGGCACAGGTCCATGCTTTTCGCAAGAAGTTGACAATAAAGGTTCTTATTTAGAAAAGGGAGTGTTTGGGAGTGTAAATATCGGGGTAGATGGGGATATGTTTGTTCCTCCCCTTGAGAACGTTAGCGCCACTATTGATCATAACCCGTGCAAGAGAGAAACTAACGCCAGTTACTTTGATGACATAAATAGTATCCTCAATAACTACGAAAATAAGGCTCATGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACGGGAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTCTTGATTTTTCATGCTGA 945 0.4296 MRKPESCSAKNNSNGSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELILHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNIMSSTTTTSNSPNVSETSSEPSKDLNIGGFISTQHHQYAHASFVPMLSSSQSPSTQTTVFNTTINRLPMMEHGLNMSHADFEGTGPCFSQEVDNKGSYLEKGVFGSVNIGVDGDMFVPPLENVSATIDHNPCKRETNASYFDDINSILNNYENKAHGVENLFQQELATGEWDFEELMKDVSSFPFLDFSC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03387 314 SMART sant 72 120 IPR001005 -
Pste3g03387 314 SMART sant 19 69 IPR001005 -
Pste3g03387 314 MobiDBLite consensus disorder prediction 1 22 - -
Pste3g03387 314 FunFam Transcription factor MYB46 74 148 - -
Pste3g03387 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pste3g03387 314 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Pste3g03387 314 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Pste3g03387 314 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pste3g03387 314 FunFam MYB transcription factor 17 73 - -
Pste3g03387 314 CDD SANT 75 115 IPR001005 -
Pste3g03387 314 MobiDBLite consensus disorder prediction 127 147 - -
Pste3g03387 314 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Pste3g03387 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Pste3g03387 314 PANTHER MYB DOMAIN PROTEIN 55 6 225 - -
Pste3g03387 314 CDD SANT 23 67 IPR001005 -
Pste3g03387 314 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pste3g03387 314 Gene3D - 17 73 - -
Pste3g03387 314 Gene3D - 74 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03387 Pste-Chr3 26656497 26658768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03387 1 309 MYB Transcription Factor Family AT5G12870 47.531 3.65e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g03387 Myb_DNA-binding 3.6e-12 CL0123