Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03367 ATGAACTCCGACACGACGTCGTATTGGTGCTACAGCTGTACGCGTTTCGTTCACATCCTGGAGCAGAACGACGTCGTTTGCCCGCGCTGCCAGGGAGGCTTTGTCGAAAAGGTGTCCGACGGCGCCTCCAGGAGGCAGGGCTTCCGCCGCCGCCGCCGAAACGGAGGGAGCCACCCGCCGTTCAACCCGGTCATCGTGCTTCGGGGACCGGGGGAGGACGACGAGAGCAGCTTTGAGTTGTATTATGACGGCGACGACGGCGACGGGCTCCGGCCGCTGCCCTCGACCATGTCTGAGTTTCTACTCGGATCGGGCTTCGATCGCCTGCTTGAGCAGGTTTCTCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAACCCGCCGGCGTCGAAGGCCGCTATAGAGTCAATGCCGACGGTGGAAATCACCGAGTCTGAGGTGGCGACGGAGACTCACACGCACACGCACTGCGCCGTGTGTAAGGAACCCTTCGAACTCGGAGCTTTGGCGCGAGAGATGCCGTGCAAGCACCTTTACCACTCCGATTGCATTCTTCCTTGGCTCTCCATGCGAAACTCGTGCCCGGTGTGCCGCCACCAGTTGCCGCCCGAGCAAACCTCGTTGGAAAGCAGAGTCGCCGGTCAGATCGAGGAGGAGGCTGTGGGGTTGACCATATGGAGATTGCCGGGCGGTGGGTTCGCCGTCGGGAGGTTCGCCGGCGAGAACCAGTTGCCGGTGGTCTACACCGAGATGGAGAGTGGTGGGAATTCCAACCAAGGTTCTCTGGCTGTTGGAAGCGTTAGAGTTAGGGAAAGTGGTGGTGGATTTAGGAGAATTTTCCGCAATTTATTTGGGAGAATTGGGGCTATCACTAGGAGCCGTAGCCTTTCAACTTCCCTCTTCAACAGAAGAAGAAGCAGTAGAACCTGGGTCTTGGGTAATTGA 945 0.5905 MNSDTTSYWCYSCTRFVHILEQNDVVCPRCQGGFVEKVSDGASRRQGFRRRRRNGGSHPPFNPVIVLRGPGEDDESSFELYYDGDDGDGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVEITESEVATETHTHTHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHQLPPEQTSLESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGENQLPVVYTEMESGGNSNQGSLAVGSVRVRESGGGFRRIFRNLFGRIGAITRSRSLSTSLFNRRRSSRTWVLGN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03367 314 SMART ring_2 157 197 IPR001841 -
Pste3g03367 314 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pste3g03367 314 Pfam Protein of unknown function (DUF1117) 221 301 IPR010543 -
Pste3g03367 314 Pfam Ring finger domain 156 198 IPR001841 -
Pste3g03367 314 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Pste3g03367 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 204 IPR013083 -
Pste3g03367 314 CDD RING-H2_RNF126-like 157 198 - -
Pste3g03367 314 SUPERFAMILY RING/U-box 133 203 - -
Pste3g03367 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 202 - -
Pste3g03367 314 FunFam E3 ubiquitin-protein ligase RING1-like 115 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03367 Pste-Chr3 26499646 26500590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03367 92 209 C3H Transcription Factor Family AT5G01980 40.678 3.58e-23 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03367 3 26499646 26500590 Pste1g02268 1 7695219 7696609 PCT