Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03340 ATGTCATCCTTTTGTGGTCAGGTTCTAGTTCTTGGTAGTCTCCGACACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACACACCCAATGGAACTCTTCAAGACTACCTTTTCCGAAAAGGCAACAATTTCCCTTTGACATGGAATACCCGAGCACGAATGATTACTGAAATTGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTAAGTTGCAAGATGTGTGGATTTGGGTTCTGCAGGCTGGTAAGTGAGGAGTCTCTCCTCTGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCTCGTATATGGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAATCTGACATCTACTCCTTCGGGCTCATCATCTTACAACTCCTCACTGGTAGGACTCCAGTGGGACTAGCAATTTTAGTACGCAATGCAGTTTCGTGTGGAAAGTTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAACGCAATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACACCTACACTAGTTAGGGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCCGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGGGATGCAATACGTGAATGGTTGGAAAATGGGCATGATACCTCTCCCATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCCAATCTTGAAGCTTCTTTTATTCATTTGGGCTAATATGCTCTTTTTTCCCATTAGTTTGCGGCCAGCGTCGTTTTAGTCCCATGATTTTTCTTTTCTTTTGTGTGTGATTGTAAATTTATTTTGTATCCCACGAAACACTGTCAAATTGATTTTATCCTAGCTTACGCCATTCAAGTAGACAGGAAGAAAAAAACAGATTGTATTTTGCCCCTATTTTCAGCAAAAAGAAAAAAGAAAGGAAAGGGCAAGTGGGGCACCCGTCAATGTCATGATTATGACTTTAATGTCATGGGATTAAATAGATTCTTGTCGGATGTGGGTGCAAAGGAAACCATTTAGCCTTTTATTTACGTAAATATTTGTATATTCTATTTTTCGCATTGCGTTTCGTTGAT 1314 0.4132 MSSFCGQVLVLGSLRHPHLITLLGVCPEAWSIVYEYTPNGTLQDYLFRKGNNFPLTWNTRARMITEIASALCFLHSFKPETIIHGDLKPETVLLDSSLSCKMCGFGFCRLVSEESLLCPSFRLSTEPKGAFSYMDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAILVRNAVSCGKLSSILDSSAGEWPSAVATQLVELGLQCCQQNRRDRPDLTPTLVRELEQLHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNHALRLAIQDWLCQS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03340 308 ProSiteProfiles U-box domain profile. 237 308 IPR003613 GO:0004842|GO:0016567
Pste3g03340 308 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
Pste3g03340 308 Pfam U-box domain 238 307 IPR003613 GO:0004842|GO:0016567
Pste3g03340 308 Pfam Protein tyrosine and serine/threonine kinase 3 220 IPR001245 GO:0004672|GO:0006468
Pste3g03340 308 SUPERFAMILY RING/U-box 233 307 - -
Pste3g03340 308 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g03340 308 SUPERFAMILY Protein kinase-like (PK-like) 3 235 IPR011009 -
Pste3g03340 308 Gene3D Phosphorylase Kinase; domain 1 1 40 - -
Pste3g03340 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 308 IPR013083 -
Pste3g03340 308 PANTHER OS02G0152300 PROTEIN 4 303 - -
Pste3g03340 308 Gene3D Transferase(Phosphotransferase) domain 1 41 238 - -
Pste3g03340 308 CDD RING-Ubox_WDSUB1-like 239 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03340 Pste-Chr3 26167698 26169204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03340 4 305 U-box Gene Family AT2G45910 50.316 3.15e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pste3g03340 PK_Tyr_Ser-Thr 5.3e-30 CL0016