Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03338 ATGAGGTGCAGGGGCGAGTTGCCTTTGTCGTTTAATGGTATGGTAGGAATAGCAATGTGGAACGGACATGTGCATGAGATGGAGGCCCAAATTGAGAGGAAGAAGCTTCTAATGATAATGGCAGACACTGAGGATATTCAACCACTGGTCTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTGTTTCCTAGCATTGTTGGTCGGCCACGGCACACGGGTGTGATGGTTGGGATGGGGCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATACTAACTCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACATTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCCGTTCTGCTCACTGAAGCCCCTCTCAATCCAAAGGCTAATCGTGAGAAAATGACCCAAATTATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCCATCCAGGCTGTTCTATCCCTTTATGCCAGTGGCCGTACAACCGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTACGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCCTCATGAAAATCCTTACTGAGCGTGGTTATTCCTTCACTACCACAGCTGAGCGAGAAATTGTAAGGGATATGAAGGAAAAGCTGGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAACTTCAAAAACCAGTTCTGCTGTTGAGAAGAGCTATGAGCTGCCTGATGGACAGGTCATCACCATTGGTGCTGAACGTTTCCGTTGTCCTGAGGTTCTCTTCCAGCCATCCATGATTGGAATGGAAGCTGTTGGCATTCATGAGACCACATACAATTCAATTATGAAGTGTGATGTTGATATCAGGAAGGACTTGTACGGAAACATAGTCCTCAGTGGCGGTTCCACCATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCTTGGCCCCAAGTAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCGAAGGCAGAGTATGATGAGTCTGGTCCTTCAATTGTACACAGGAAATGCTTTTAAATGCTGCAGAATGGCTTGGGGTAGGTACGGTGTCCTCATTTGGCAATTCAGTAGCAATTTGCAATGATCCAAGATTTTTCTTAACAAAATGTTTGTGTTGTTAGAACAGCGAACTGAGATAAAGTGGAGTTTAATGGCCGAATTAATTCTTTCATTTGTTTTGTTTTACACTTTTACCGTTGGTAATTGTTGAACAGTTGATCTTTAATGATAAATCAAAACCATATCAG 1481 0.4558 MRCRGELPLSFNGMVGIAMWNGHVHEMEAQIERKKLLMIMADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03338 416 PRINTS Actin signature 67 76 IPR004000 -
Pste3g03338 416 PRINTS Actin signature 90 101 IPR004000 -
Pste3g03338 416 PRINTS Actin signature 102 124 IPR004000 -
Pste3g03338 416 PRINTS Actin signature 156 169 IPR004000 -
Pste3g03338 416 PRINTS Actin signature 181 200 IPR004000 -
Pste3g03338 416 PRINTS Actin signature 277 293 IPR004000 -
Pste3g03338 416 SUPERFAMILY Actin-like ATPase domain 188 416 IPR043129 -
Pste3g03338 416 SUPERFAMILY Actin-like ATPase domain 45 194 IPR043129 -
Pste3g03338 416 PANTHER ACTIN 48 409 IPR004000 -
Pste3g03338 416 FunFam Actin, muscle 221 312 - -
Pste3g03338 416 FunFam Major actin 299 379 - -
Pste3g03338 416 ProSitePatterns Actins signature 2. 397 405 IPR004001 -
Pste3g03338 416 Pfam Actin 44 416 IPR004000 -
Pste3g03338 416 FunFam Putative actin-related protein 5 380 408 - -
Pste3g03338 416 Gene3D Actin; Chain A, domain 4 221 312 - -
Pste3g03338 416 FunFam Actin, alpha skeletal muscle 42 210 - -
Pste3g03338 416 SMART actin_3 46 416 IPR004000 -
Pste3g03338 416 ProSitePatterns Actins signature 1. 94 104 IPR004001 -
Pste3g03338 416 Gene3D - 179 379 - -
Pste3g03338 416 CDD NBD_sugar-kinase_HSP70_actin 49 222 - -
Pste3g03338 416 ProSitePatterns Actins and actin-related proteins signature. 145 157 IPR020902 -
Pste3g03338 416 Gene3D - 49 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03338 Pste-Chr3 26159397 26161773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03338 40 416 Cytoskeleton Gene Families AT3G12110 96.552 0.0 763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03338 3 26159397 26161773 Pste1g02320 1 8012759 8014573 PCT