Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03323 ATGTCACAGAGAATTGGGACGAAGCTCTTTGTCTACAGATTATCCTTTTACACTACACTGGATCAGCTCAAGAAGTTGTTCTCCCCATTTGGAGTAGTTACCAATGCTAATCTGGTGATGGATCCTGTAACTAAAAGGCACAAAGGGTTTGGGTTTGTGTCCTACAAGACTGAAATTGAAGCGGAAAAGGCTATGAAAGCCATGAATGGCAGGGTAATTTTCTCTTTGACATGTCTCCTTCCCTCTAAGTGA 252 0.4206 MSQRIGTKLFVYRLSFYTTLDQLKKLFSPFGVVTNANLVMDPVTKRHKGFGFVSYKTEIEAEKAMKAMNGRVIFSLTCLLPSK 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03323 83 SMART rrm1_1 8 79 IPR000504 GO:0003723
Pste3g03323 83 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Pste3g03323 83 Gene3D - 2 78 IPR012677 -
Pste3g03323 83 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 83 IPR000504 GO:0003723
Pste3g03323 83 SUPERFAMILY RNA-binding domain, RBD 4 75 IPR035979 GO:0003676
Pste3g03323 83 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03323 Pste-Chr3 25982875 25983292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03323 6 75 Eukaryotic Initiation Factors Gene Family AT1G49760 37.143 5.66e-11 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03323 3 25982875 25983292 Pste3g03323 3 25982875 25983292 ECH