Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03320 ATGCTATTAAGCAAAGTTGGTGCTAGTGAAAGTGATGATAATAATATCAGTGGTGATTTCAAATGTAAAACTTGCAACAGAAGATTCTCTTCTTACCAAGCCCTTGGAGGCCACCGAGCAAGTCACAAGAAGCCAAAGCTGATGGTCACAGATGTTTGGTGGCTGAGTCCGACCATGAAAGAACATAGGAATAGGATGCACCCATGTCCCATTTGTGGCCTTCAGTTTGGCGTTGGACAAGCTTTGGGAGGGCACATGAGAAAGCATACAAGTCGTAATTTGCTGCTTTCTCGTAAACTTTCCTTCTCCTTCGACTTAAATTTGACGCCATTGGAGAATCATCATCTTAACCTTAACCTAAGAACCCCCCTCCTCATTTGA 381 0.4331 MLLSKVGASESDDNNISGDFKCKTCNRRFSSYQALGGHRASHKKPKLMVTDVWWLSPTMKEHRNRMHPCPICGLQFGVGQALGGHMRKHTSRNLLLSRKLSFSFDLNLTPLENHHLNLNLRTPLLI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03320 126 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Pste3g03320 126 SMART c2h2final6 67 89 IPR013087 -
Pste3g03320 126 SMART c2h2final6 20 42 IPR013087 -
Pste3g03320 126 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Pste3g03320 126 Pfam C2H2-type zinc finger 67 89 - -
Pste3g03320 126 Pfam C2H2-type zinc finger 20 45 - -
Pste3g03320 126 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Pste3g03320 126 SUPERFAMILY beta-beta-alpha zinc fingers 20 89 IPR036236 -
Pste3g03320 126 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Pste3g03320 126 Gene3D Classic Zinc Finger 17 89 - -
Pste3g03320 126 PANTHER ZINC FINGER PROTEIN ZAT5 18 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03320 Pste-Chr3 25953239 25953619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03320 2 113 C2H2 Transcription Factor Family AT2G37430 47.727 4.61e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g03320 zf-C2H2_6 5.5e-08 CL0361