Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03309 GGAAGAGAAAGTAGCGGAGCAGGTAGGGTTTCTCTTTCTTCCGAACCTCTTGGCAGCGCGACACAGGAGCTTCGCATTCGCAATGGCGAGAATCAAGGTGTACGAGCTGAGGAACAAAACCAAAGCAGAGCTTCTCAACCAACTGAAGGATCTCAAAGCAGAACTCGCTCTGCTCCGTGTGGCTAAGGTCACCGGCGGAGCCCCAAATAAGCTTTCCAAAATCAAAGTGGTTCGACTTTCGATAGCGCAGGTGCTGACGGTGATTTCTCAGAAGCAAAAGGCAGCGTTGAGGGAGGCTTACAAGAATAAGAAATACCTTCCGTTGGATCTGCGTCCCAAGAAGACCAGGGCCATCAGAAGGCGCTTAACTAAGCACCAGGCATCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGCTGTATTTTCCATTGCGAAAATATGCAGTTAAAGTGTAATGCGAAGTCCAATTACGGATAATAATTTTGGTGTTACTCTCTATTTGTTATTTGACATACGTAGTTTTGTTTCCGGCCGTTCGGTTTTTTTGTCGTTTCTTCCTAGTCTTTTAAATCATCATGAAACTGAATTAAAAGTTTGCTTATTTTGCTCTGGCTTTTGGTTGTTTTTTTTTTGTATCTGAAAATTTTCAATTTCTTGC 657 0.4384 MARIKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAVKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03309 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pste3g03309 123 Gene3D - 78 123 - -
Pste3g03309 123 FunFam 60S ribosomal protein L35 1 77 - -
Pste3g03309 123 Coils Coil 7 34 - -
Pste3g03309 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pste3g03309 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pste3g03309 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Pste3g03309 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pste3g03309 123 CDD Ribosomal_L29_HIP 8 64 - -
Pste3g03309 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pste3g03309 123 FunFam 60S ribosomal protein L35 78 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03309 Pste-Chr3 25764913 25766728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03309 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 88.618 2.06e-73 213
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03309 3 25764913 25766728 Pste3g03309 3 25764913 25766728 ECH