Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03279 GAAAGTAGAAGGTTCTGGGGCCAACGCTCGGCTTGACAAACCCAAACCCTAGCCCTTCCTTAATCCCTAATCTCTCTCTCTCTCTCTCTCTTTTTCTTATCTTCTTCTTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAACAAACATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGATACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACAACCGCTGATGACCTATTCCCTCTCTTCGATAAGTATGGCAAGGTCGTCGACATCTTCATTCCCAAAGATCGAAGAACCGGTGAGTCGAGGGGTTTTGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTCGATAGGCTTGATGGAAGAATGGTTGATGGCCGTGAAATTACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATAATTGAAACAGCCCCCAGATCAAGGTACAGATCAAGGAGTCGTAGTCCCAGCAGGAAAAGGTATCGTGATGATTACAAAGACCGTGATTATAGGAGGAGAAGTCGCAGCAGAAGCTACGATAGGTATGAACGTGACAGGCACCGTGGGAGAGACAAAGATTATCGTCGTAGAAGCAGAAGCCGTAGTACCAGTCTTGATTACAAGGGCCGTGGGAGGGGACGCTATGATGATGAGCGCAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCGTTCCCCTCAGAGGAGTGGTTCCCCTCAAAGGAGTACTTCTCCTAGGAAAAGTCCAAGGGGTGAAAGTCCTGCAAATCGTAGCCGTGATGGACGTTCTCCCACGCCTCGCAGTGTTTCACCACGCGGTCGTCCTGATGCTTCGCGAAGTCCTTCCCCTAGAAATTCAAATGGGGATCTGTCTGTTGCTGCCCTTTTTGCTGAGATCGGGTTGGCAATGGTATTAGCAGTTGGTACTGATGATGGCTGTCTAGCTGTGCTGCTGGTTTCTGTTGATTCCAAAGCCGCATTAATGTCTATTGCTTGTCCTTTTGGTTGCTTTCACTTTGTGATCACTATTGCAGCATTGAGTTGTGGTTACCGTGTTACAACTGAAATAACTAATGTGATTTAG 1168 0.4863 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAPRSRYRSRSRSPSRKRYRDDYKDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSTSLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSRSPQRSGSPQRSTSPRKSPRGESPANRSRDGRSPTPRSVSPRGRPDASRSPSPRNSNGDLSVAALFAEIGLAMVLAVGTDDGCLAVLLVSVDSKAALMSIACPFGCFHFVITIAALSCGYRVTTEITNVI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03279 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Pste3g03279 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pste3g03279 339 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pste3g03279 339 Gene3D - 4 103 IPR012677 -
Pste3g03279 339 SMART rrm2_1 17 90 IPR003954 GO:0003676
Pste3g03279 339 MobiDBLite consensus disorder prediction 102 267 - -
Pste3g03279 339 CDD RRM_SRSF2_SRSF8 18 90 - -
Pste3g03279 339 MobiDBLite consensus disorder prediction 209 230 - -
Pste3g03279 339 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 258 - -
Pste3g03279 339 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pste3g03279 339 MobiDBLite consensus disorder prediction 123 197 - -
Pste3g03279 339 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03279 Pste-Chr3 25352283 25356116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03279 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 4.71e-10 58.2