Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03258 CACACACCCTTCTTCTCTCTTGTTATTAGTGTCCCTAAAATACACAAAGTAGAAGCCAAACAGAAAAGAACAAATTAGGAGCAGTAATGGAGAGTGAGACAAACACCACTACTTCTTCACCCACATTTTCTCATTCTTCTAATACCCCATCTTCACCTCCCCAAGTTGTCATCAGCCCTTGTGCTGCTTGCAAGATTCTAAGGCGAAGATGTGCTGAGAAATGTGTTTTAGCACCTTATTTCCCTCCCACTGAGCCTGTCAAGTTTACCACTGCCCATCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGAGCAAGAATAAGAGACCCAGTGTACGGATGTGCAGGTGCAATTTGCCAGCTTCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTAGTGGCTCTAATTTGCATGGAAATGACACAAACTCCACAGGAATCACCACAACAATCCGTGAATAACTTCATTTCAAGTCCTTCCCACACCAGCGGCTATCAAAACAATCTCAATTTCTTTGATGAGAACACTAGCCTAAACTCTTTGTGGGAGCCTCTTTGGACA 674 0.4407 MESETNTTTSSPTFSHSSNTPSSPPQVVISPCAACKILRRRCAEKCVLAPYFPPTEPVKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMTQTPQESPQQSVNNFISSPSHTSGYQNNLNFFDENTSLNSLWEPLWT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03258 196 MobiDBLite consensus disorder prediction 1 26 - -
Pste3g03258 196 Coils Coil 110 137 - -
Pste3g03258 196 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Pste3g03258 196 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
Pste3g03258 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03258 Pste-Chr3 25210299 25211907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03258 27 196 AS2 family AT2G28500 65.946 1.41e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste3g03258 LOB 1.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03258 3 25210299 25211907 Pste3g03258 3 25210299 25211907 ECH
Pste3g03258 3 25210299 25211907 Pste1g02531 1 9422400 9423882 PCT