Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03248 TTCCAACTCCCAACTCCCAACTCCAAAAGCCACTTCCACATTGCCTTTTGTTTTTGTGCCTCCTATGCAATTGTCTATGTCTCTTGCCTCTGCTCCCTCTTTCAACTACCTTCAAATGGGGATGCAATCATACTTTCAATTTCTTGTTATTATTTCATTCATATTCTCTTCTCTTCTTCCCACCACGTCCTCTGTTCCACTCATCCCCTAAACAACAACAACCACACTGGGGTGTTCATGGAAATTGATCTGAACGATGCAGTGACTGAGTCTGAGAAGAGTGTCTCTTGCAATGGGGAGTGTGAGAAAGGTGCTGCTTGTGTTTGCTGTTTGTCCTCTCCAACTTGTTCATCTTCTGGTTCCTCTTCTGCACGTGTGGCCTCTTCTTATCTTGCGCTGTGGCACGCTTGTGCTGGCCCCCTCACTTTCCTCCCAAAGAAAGAGAATGTGGTAGTGTATTTCCCCCAAGGGCACTTAGAACAAGCTGCAACTTTCTCTCCCTTTTCACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATGTTCAGCTACTTGCCAATAAAGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGCATTTGGAGGGAAAAGAACTAGAGGAATTGGGAGCACATGGAGAGGAAAATGAAACAACTCTTGCAAAGTCCACCCCTCACATGTTTTGCAAAACGCTTACAGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTTCATGGTGTGGAGTGGAAATTTAGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTTACTACTGGCTGGAGTACTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCTGTTCTCTTTCTAAGGGGTGAAAAGGGAGAATTGAGATTGGGAATCCGAAGAGCTACTCGACCAAGAAATGTTCTTCCTGAATCAATCGTTGGTAGCCAGAGTTATTATCCCAAATTTCTTTATTCTGTGGTTAATGCTATATCCGCAAAAAGCATGTTTCATGTTTTCTGTAGTCCAAGGTATGGAGAACAGAGAAGCACGACCCGAACCTATAAAAGCATGTGTTGCTACTTAGATAGGTCACATTTTATTATATGTCTCATAAGTGTAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCCGGTGACCATTGGAACAAGATTCAAAATGAAATTTGAAATGGACGAAACTCTGGAAAGAAGGTGTACCAGTGGTATACTGACTGGAATTAATGATTTGGATCCCTATAATTGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCACCAAGATAGAGTCTCTCCATGGGAAATTGATCTTTCTGCTTCTCTCTCCCTCTTGAGCATTCAATCTTCCAGAAGGCTGAAAAAACTGCGGCCAAATCTTCAGGCTGCCTCACCCAGTCACATTATCACTGGTGTGACAGCAGGAGTCAGTGGTTTTATGGACTCCGAGAAGTCTTTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTAACACAGTAACTAAGCAGTCAGAATTTGAGATCAGATCTCCAAGTTATCTCAATCTTGCATCCACTGGAGTGAGAGAGATGGTTGCTGCTGAGTTTATGAGGGTTCACCCTTATAGTTATGCAGGCTTCACAGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTCAAATCCCTGACAGGAAAGGTTGATTTGAACTATGGTGCTTGGAGCAAGTCCAATGTCAGCTGCACAAATTATAACCAGCATCAGGCAACCAAACCTAACTTTCATTCTTTAGGACCAGAAGTTATTCAAAGTGCTTATTTTCCTAGTGGTGATATTCACAAAGCTAGCCAAGGTAACAGCACGTTGTGCTCTAAACCTGCCAATTTCCAACGAGGGAATGTCCCATTTAACACTCCTTCCACTCGGTCAGGGATCATAAGAAATGAAGTTGGACAAACAGATGTCAGAGTCACAAATGAGCAGAAGCTGCAGGAGAATATTTCTGGCACTGCTGCTTTAGGGATAAACATGAGGATTCCAAATGATGACAACTTCAAGGGGAAGGTAAACACTTGTAAATTATTTGGGTTTTCCTTGTCAGGGGAAACTACAACCCAAAATTTACAGAATTCAACTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGTTTAGTTGGAAGATCCATTGATCTCTCAAGAATGAGCAGCTACAATGACCTACTGACTGAACTAGAGAGATTATTTAGCATGGATGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTGTACACTGACAGCGAAAATGGCATTATGGTTGTGGGGGATGACCCATGGCATGAGTTCTGCAATGTAGTGTCCAAGATTCATATACAAACACAAGAAGTGGAAAAGATGACAATTGGGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATAGTGGAGGCTTCAAAGTCTTCCTCCGTGGGTCAGCCAGATTCTTCTCCAACA 2736 0.4287 FQLPTPNSKSHFHIAFCFCASYAIVYVSCLCSLFQLPSNGDAIILSISCYYFIHILFSSSHHVLCSTHPLNNNNHTGVFMEIDLNDAVTESEKSVSCNGECEKGAACVCCLSSPTCSSSGSSSARVASSYLALWHACAGPLTFLPKKENVVVYFPQGHLEQAATFSPFSPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMHLEGKELEELGAHGEENETTLAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSTFVSQKNLVSGDAVLFLRGEKGELRLGIRRATRPRNVLPESIVGSQSYYPKFLYSVVNAISAKSMFHVFCSPRYGEQRSTTRTYKSMCCYLDRSHFIICLISVASHADFVVPYQKYIKSIKNPVTIGTRFKMKFEMDETLERRCTSGILTGINDLDPYNWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDLSASLSLLSIQSSRRLKKLRPNLQAASPSHIITGVTAGVSGFMDSEKSLRSSKVLQGQENTGFMSLYYGCNTVTKQSEFEIRSPSYLNLASTGVREMVAAEFMRVHPYSYAGFTETNRFPRVLQGQEICPFKSLTGKVDLNYGAWSKSNVSCTNYNQHQATKPNFHSLGPEVIQSAYFPSGDIHKASQGNSTLCSKPANFQRGNVPFNTPSTRSGIIRNEVGQTDVRVTNEQKLQENISGTAALGINMRIPNDDNFKGKVNTCKLFGFSLSGETTTQNLQNSTKRSCTKVHKQGSLVGRSIDLSRMSSYNDLLTELERLFSMDGLLRDPNKGWRILYTDSENGIMVVGDDPWHEFCNVVSKIHIQTQEVEKMTIGMINDDTQSCLEQAPVIVEASKSSSVGQPDSSPT 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03248 912 ProSiteProfiles B3 DNA-binding domain profile. 244 346 IPR003340 GO:0003677
Pste3g03248 912 SUPERFAMILY DNA-binding pseudobarrel domain 236 360 IPR015300 -
Pste3g03248 912 Gene3D - 438 512 - -
Pste3g03248 912 SMART B3_2 244 346 IPR003340 GO:0003677
Pste3g03248 912 Gene3D - 785 877 - -
Pste3g03248 912 CDD B3_DNA 242 344 IPR003340 GO:0003677
Pste3g03248 912 ProSiteProfiles PB1 domain profile. 789 871 IPR000270 GO:0005515
Pste3g03248 912 SUPERFAMILY CAD & PB1 domains 791 870 - -
Pste3g03248 912 FunFam Auxin response factor 437 510 - -
Pste3g03248 912 Pfam B3 DNA binding domain 244 345 IPR003340 GO:0003677
Pste3g03248 912 Gene3D - 242 346 IPR015300 -
Pste3g03248 912 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 130 877 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste3g03248 912 Pfam Auxin response factor 407 482 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste3g03248 912 FunFam Auxin response factor 242 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03248 Pste-Chr3 25152078 25158257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03248 126 912 B3 DNA Binding Superfamily AT5G60450 55.164 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste3g03248 B3 4e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03248 3 25152078 25158257 Pste3g03248 3 25152078 25158257 ECH
Pste3g03248 3 25152078 25158257 Pste1g02570 1 9657452 9663000 PCT