Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03239 ATAGCACTTACCTCTCTTATTTAAAGCCGGCCAAATTGATATCATCGGCACTTATTGATTCCCTTGTTAAGAGCTAAGTATTGTTTTTCTCTAATGGAGGGAGATCAACAGGGTTGTGATTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAGGAACTCATTGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCGTCCATTATAGCTGAAATTGATTTGTACAAGTATAACCCATGGGAGCTACCCAATAAATCATTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGCCCAAGAGAGAGAAAGTACCCGAATGGATTGAGGCCAAACAGGGCAGCAGCCTCAGGATACTGGAAGGCAACTGGAACTGACAAGCCAATTCATTCTTCTACCTGTGGATCAAAGCGCATTGGAGTGAAGAAAGCTCTGGTGTTCTATTCAGGTCGACCTCCTAAGGGAGCTAAGACGGATTGGATCATGAATGAATATCGATTGGTTGACACAACCACCACATCCTCCAGGCTCAAAGGCTCCATGCGGTTGGATGACTGGGTATTGTGCCGGGTTCGACATAAAGGCTACTCTTGGAAGAATTCATGTGAAAATCAAGAGAGTGCTAGTGAAGTACTGAACTTGCCAGCAAAACTAGCGAGGAGTGAAGAATACCCAACAAGCATGAACTGTCATGCTGACATGATCACGGATTATCAATACAAAGACTATCAAATCATAGCCTCTATTCTTGTTGGTGGACCCATTCCTCCCACTGAAGACATGCCAAATCTGAGCTTTAAGGGATGCAAAAGCAACAATATAGTTTCTGTTTATGAAGACGGTTTCACTAAACTCAATTCTCAAACGACAATTCCTTCCTTGGACTCTTATTTCAGTCCACTGGCAAGAATATCCAATGAAGATGTACAGTATGGAAATCTCATTTCTTTTAAGAGCAAGTTCAGCATTGAGAACAAAATGGACGAATCTCCTAGCAAGGTGTTGACCAGTAGAGAACTGAATTGCCATGACCAAAACCGGTCTCAAGATGACATTTTCAATGGGAACCCACCAGATCCTAGCATCAATTTTCAAGAGCTAACCGAATTAGCCTTTACAGGAAAGTATCCGCAGTGA 1149 0.4247 MEGDQQGCDYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRERKYPNGLRPNRAAASGYWKATGTDKPIHSSTCGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTTTTSSRLKGSMRLDDWVLCRVRHKGYSWKNSCENQESASEVLNLPAKLARSEEYPTSMNCHADMITDYQYKDYQIIASILVGGPIPPTEDMPNLSFKGCKSNNIVSVYEDGFTKLNSQTTIPSLDSYFSPLARISNEDVQYGNLISFKSKFSIENKMDESPSKVLTSRELNCHDQNRSQDDIFNGNPPDPSINFQELTELAFTGKYPQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03239 351 Gene3D NAC domain 21 172 IPR036093 GO:0003677|GO:0006355
Pste3g03239 351 FunFam NAC domain-containing protein 72-like 21 172 - -
Pste3g03239 351 SUPERFAMILY NAC domain 10 167 IPR036093 GO:0003677|GO:0006355
Pste3g03239 351 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Pste3g03239 351 ProSiteProfiles NAC domain profile. 12 167 IPR003441 GO:0003677|GO:0006355
Pste3g03239 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03239 Pste-Chr3 25066929 25068610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03239 11 185 NAC Transcription Factor Family AT1G69490 66.286 1.16e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g03239 NAM 2.8e-38 No_clan