Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03235 AGAAAGTGGTCCAGATTAGTCTATGGCTGACTGACACCCACAGCAGCCGTGTTGATAAGGAGAGAAAGTTAATTACACATTCAGTGGGCTGCTACAATATATTTCTTATTCCCTCCTCTCTTTCATCAAACTCCACATTTCTGCCATTCACATCTTCAACCTACCTGCTATAATTAAGGTGACTTTAATTTTCTTCTCTTCCAACCATGATGTCTCAAGAAGCAGTATCTGTTCTTTCCAACCCCTCCGTTCAACTTCATGAACCAAATTCAAACTCAAACTCAAATTCAAATTCAAACCCTAATCCTAACCCTAATTCAGTTAAGAGAAAAAGAAGCCTACCAGGAACACCAGGCAAGTTACTTAAGTCCATCTCTTCAATTCCAATCTATCCTGCATGCATATCATATTATTTCACAAAAATTATATATGTAATTAATTAAACAAAATTATGAGGGTGTGATTGAATGGACGAAGCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCACTGATGGCGACGAATCGCTTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAACTTGCCGTGGAAACTGAGGCAGAGATCGAAGGAAGAGGTGAGAAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGTGTGCACCATGACCCTAGCAGAGCCCTGGGAGACCTCACCGGGATAAAGAAGCACTATAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTCGTAACGCATAGAGCCTTCTGTGACGCCATGGCTGAACAAAATGCGAGACTTCCGGGAGTTTTATCAAACCTTGGAAACGAGATTCTGATGAATGCTCAAGCGCCGAGAGTGATGCCTCAGGGTTTACAAATACATGGGTTTCATACAGAGTTTGGTGGGCCAGGCCCAGAACCATACATGGGGAATTTCGCGGATGTGGAACATGAACATAAGTTAAGGCTGCCGCTGTGGCTAGACCAGACCAATCTTCACCTCAATCATTCTCTTAGCGTTGTTCCAAGCAACTCGACAGTATTCTCACCGGCTGAAGCAAACAACATGTTTGGGACATCATCGTCGCAGGGACAGTGGCTGAATTACCGATACCCAGAAGCATCATTCACATGTGCCAATATTTCTATGGTTCAAGGAATGAAGCTGGAGCGAGAAGAAAACAAAGGGGAGTTGTCGCATAGTGTGGGCTCGTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGTAATTCAGGCTTCGACAACTCTGGCTTTGGCTTGTTAGAAGCCAATATGTCAAGCACGTCCAGCAACCACCGCATCAATAATGTTGTAGAAATCCAGAAATTATTCAAGCAAGCTAATCAGACTGAGAACTTCAACCACATGTTGATTTCCCAAGCAGGCACCAACGTTGGAGGTGGCTTTTCTCTGACAAGCACCAAGAGTATGGAGCATATGGTGATGCCACGGATCGAAGAGTGGGAAAGTGGACCACCAGAAATAATGGACAAGCAACTACCTTTGAGTTCAAATACTGAAGACCAGTTAACCAAAGACTTCATGGGTGTTGGAGACGGGTCATTAAGCAGGCCAATGGGACCAGTGATGAACCTCCAAAACCAGTTCCGCGAACATTATTGATGGATGGAGGTTAATTAAGGTAGCAACTAGCAAGTGAGGTTAGTATGATTGATTAAGACACATAGCTAGCTATTACAAGTTAGAAGAAGCAGAAGTGACGATCGATAACAAAGAGATTGGGAGGCATGCACAGGGAGATATCACGTGATGAAATCGATATCATAAAGACATCCCGTGAAGGACGTGGGGGCCATTGCGTTTTGGAATAGACAATATATATTCCTTGCATTCTATGCTTCTTGTATTGTATATTGTCATATAACAATTTGCCTGCTTATAATTAATGTATCATAGGGCAAACACGTACACAAAACGCCTTCCCTCCATCAATCTCCTACAAACACTACCACTTAGCTTACGTGCATTCAATAATTATTCACTTGCTTCCTTATCTTTTCTTAATCCCTTTCTTTTCCTACGGGACTCATCATAAATAAATCACACTTTTTCTTCCA 2245 0.4339 MDEADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQNARLPGVLSNLGNEILMNAQAPRVMPQGLQIHGFHTEFGGPGPEPYMGNFADVEHEHKLRLPLWLDQTNLHLNHSLSVVPSNSTVFSPAEANNMFGTSSSQGQWLNYRYPEASFTCANISMVQGMKLEREENKGELSHSVGSLYPSHMESTRMSGNSGFDNSGFGLLEANMSSTSSNHRINNVVEIQKLFKQANQTENFNHMLISQAGTNVGGGFSLTSTKSMEHMVMPRIEEWESGPPEIMDKQLPLSSNTEDQLTKDFMGVGDGSLSRPMGPVMNLQNQFREHY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03235 440 Pfam Zinc-finger double-stranded RNA-binding 24 46 IPR022755 -
Pste3g03235 440 FunFam protein indeterminate-domain 5, chloroplastic-like 78 157 - -
Pste3g03235 440 Gene3D Classic Zinc Finger 4 75 - -
Pste3g03235 440 Gene3D Classic Zinc Finger 76 157 - -
Pste3g03235 440 SUPERFAMILY beta-beta-alpha zinc fingers 23 120 IPR036236 -
Pste3g03235 440 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Pste3g03235 440 SMART c2h2final6 100 120 IPR013087 -
Pste3g03235 440 SMART c2h2final6 65 95 IPR013087 -
Pste3g03235 440 SMART c2h2final6 24 46 IPR013087 -
Pste3g03235 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 424 IPR031140 -
Pste3g03235 440 FunFam protein indeterminate-domain 12-like 3 71 - -
Pste3g03235 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 46 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03235 Pste-Chr3 25039428 25042142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03235 5 157 IDZ Gene Family AT3G50700 86.275 1.57e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g03235 zf-C2H2_jaz 7.3e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03235 3 25039428 25042142 Pste3g03235 3 25039428 25042142 ECH
Pste3g03235 3 25039428 25042142 Pste1g02583 1 9761272 9763655 PCT